View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_32 (Length: 278)
Name: NF8438_low_32
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 31710536 - 31710274
Alignment:
| Q |
7 |
cgcgattgaagatttaaacgtcaaaccaaacatatgttaagagtattattggtttgagaatttgtttttatctagttctcactaatcatttcggcctggt |
106 |
Q |
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| T |
31710536 |
cgcgattgaagatttaaacttcaaaccaaacatatgttaagaatattattggtttgagaatttgtttttatctagttctcaccagtcatttcggcctcgt |
31710437 |
T |
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| Q |
107 |
atatatcatgtctgatatctcagtagatttgtcaaaattacgaagagccaccttaattttgcaaaataccgtggccattttctcgaatcatatatatgat |
206 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
31710436 |
atatatcatgtctggtatctcagtagatttgtcaaaatcacgaaaagccaccttaattttgtaaattaccgtggccattttctcgaatcatatatatgat |
31710337 |
T |
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| Q |
207 |
tttaacataattcaaatgcaattatgaattactcgtacattatcaaaactagcctagaataat |
269 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31710336 |
tttagcataattcaaatgcaattatgaattactagtacattatcaaaactagcctagaataat |
31710274 |
T |
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