View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8438_low_33 (Length: 276)
Name: NF8438_low_33
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_33 |
 | |
|
| [»] scaffold0381 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0381 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0381
Description:
Target: scaffold0381; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 4375 - 4628
Alignment:
| Q |
1 |
taccaattcagcctttgtgttcttttctccataaaagccatctgtcttagtgattgtgtgattctcatttccttcttcatattccttggccgcacatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
4375 |
taccaattcagcctttgtgttcttttctccataaaagccatctgtcttagtgattgtgtgattcacatttccttcttcatattgcttggccgcacatcaa |
4474 |
T |
|
| Q |
101 |
ataaattcccttgcgtgttttaacagccgccgttttgatcttgtgtggattctccaattttggaataaggnnnnnnnnnaggggtgacagatgagtgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
4475 |
ataaattcccttgcgtgttttaacagccgccgttttgatcttgtgtggattctccaattttggaataagg--ggtttttagggctgatagatgagtgtta |
4572 |
T |
|
| Q |
201 |
ttagttggaactgccggggattaggcagcccaagtgcagttcctgatttgaaatat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
4573 |
ttagttggaactgccggggattaggcagcccgagcgcagttcctgatttgaaatat |
4628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 27015408 - 27015155
Alignment:
| Q |
1 |
taccaattcagcctttgtgttcttttctccataaaagccatctgtcttagtgattgtgtgattctcatttccttcttcatattccttggccgcacatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
27015408 |
taccaattcagcctttgtgttcttttctccataaaagccatctgtcttagtgattgtgtgattcacatttccttcttcatattgcttggccgcacatcaa |
27015309 |
T |
|
| Q |
101 |
ataaattcccttgcgtgttttaacagccgccgttttgatcttgtgtggattctccaattttggaataaggnnnnnnnnnaggggtgacagatgagtgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
27015308 |
ataaattcccttgcgtgttttaacagccgccgttttgatcttgtgtggattctccaattttggaataagg--ggtttttagggctgatagatgagtgtta |
27015211 |
T |
|
| Q |
201 |
ttagttggaactgccggggattaggcagcccaagtgcagttcctgatttgaaatat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
27015210 |
ttagttggaactgccggggattaggcagcccgagcgcagttcctgatttgaaatat |
27015155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 51263359 - 51263319
Alignment:
| Q |
203 |
agttggaactgccggggattaggcagcccaagtgcagttcc |
243 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
51263359 |
agttggaactgtcggggattgggcagcccgagtgcagttcc |
51263319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 12530501 - 12530247
Alignment:
| Q |
1 |
taccaattcagcctttgtgttcttttctccataaaagccatctgtcttagtgattgtgtgattctcatttccttcttcatattccttggccgcacatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
12530501 |
taccaattcagcctttgtgttcttttctccataaaagccacctgccttagtgattgtgtgattctcatttccttcttcatattcgttggccacacatcaa |
12530402 |
T |
|
| Q |
101 |
ataaattcccttgcgtgttttaacagccgccgttttgatcttgtgtggattctccaattttggaataaggnnnnnnnnnaggggtgacagatgagtgtta |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
12530401 |
ataaattcccttgcgcgttttaacagccgccgttttggtcttgtgtggattctccaattttggaataagg-ggttttttagggctgacagatgagtgtta |
12530303 |
T |
|
| Q |
201 |
ttagttggaactgccggggattaggcagcccaagtgcagttcctgatttgaaatat |
256 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
12530302 |
ttagttggaactgccggggattaggaagcccgagcgcagttcctgatttgaaatat |
12530247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 5605192 - 5605133
Alignment:
| Q |
185 |
tgacagatgagtgttattagttggaactgccggggattaggcagcccaagtgcagttcct |
244 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||||| ||||| ||||| |||||||||||| |
|
|
| T |
5605192 |
tgacagatgagtgtcattagtttgaactgtcggggtttagggagcccgagtgcagttcct |
5605133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 27264917 - 27264957
Alignment:
| Q |
203 |
agttggaactgccggggattaggcagcccaagtgcagttcc |
243 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
27264917 |
agttggaactgtcggggattgggcagctcaagtgcagttcc |
27264957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 48950804 - 48950764
Alignment:
| Q |
203 |
agttggaactgccggggattaggcagcccaagtgcagttcc |
243 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
48950804 |
agttggaactgtcggggattgggcagcccgagtgcagttcc |
48950764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University