View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_4 (Length: 569)
Name: NF8438_low_4
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 63 - 551
Target Start/End: Complemental strand, 6476583 - 6476095
Alignment:
| Q |
63 |
agaccagaggatgatataaggcactggactaagtttcaatcttttggtcccctattggtaacaatctcaccttggtatcatgtgtaagatagattcatcc |
162 |
Q |
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| T |
6476583 |
agaccagaggatgatataaggcactggactaagtttcaatcttttggtcccctattggtaacaatctcaccttggtatcatgtgtaagataggttcatcc |
6476484 |
T |
|
| Q |
163 |
ccagatgtaatgtttctaatgcatttcatttttccagagccaagtagaggtagatggtggcaagtctgtggacctaagcaactatccttacatattcatg |
262 |
Q |
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| T |
6476483 |
ctagatgtaatgtttctaatgcatttcatttttccagagccaagtagaggtagatggtggcaagtctgtggacctaagcaactatccttacatattcatg |
6476384 |
T |
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| Q |
263 |
gtaaattgattttcaccaatacaaaacttaaaatattaaaagactttattttatctgaaatgtaaacactaacatttccattatgttctttgtttcagag |
362 |
Q |
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| T |
6476383 |
gtaaattgattttcaccaatacaaaacttaaaatattaaaagactttattttatctgaaatgtaaacactaacatttgcattatgttctttgtttcagag |
6476284 |
T |
|
| Q |
363 |
atggaaggagcagtatttcgtgaatgtcggaactgactgtgggttaacaatagctggattttactacgtttgtttctcatgcaccgatggttctatcagt |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6476283 |
atggaaggagcagtatttcgtgaatgtcggaactgactgtgggttaacaatagctggattttactacgtttgtttctcatgcaccgatggttctatcagt |
6476184 |
T |
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| Q |
463 |
ggtttctattacgatccgaatagcaggtacttctgttggattccaatttgttattactagtttatatctgtgtttgtttatcaaattcg |
551 |
Q |
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| T |
6476183 |
ggtttctattacgatccgaatagcaggtacttctgttggattccaatttgttattactagtttatatctgtgtttgtttatcaaattcg |
6476095 |
T |
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