View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_43 (Length: 227)
Name: NF8438_low_43
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_43 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 32598107 - 32598333
Alignment:
| Q |
1 |
aagtaaaatcatgagacaaaacaaggtaatagaaagaagatgtaacccacatcaattattaatggaccgaatgcaagatatataagagatgtaactcata |
100 |
Q |
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| T |
32598107 |
aagtaaaatcatgagacaaaacaaggtaatagaaagaagatgtaacccacatcaattattaatggaccgaatacaagatatataagagatgtaactcata |
32598206 |
T |
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| Q |
101 |
tttcaaatgttttaaggtattgggtgaaagggtactatctcaatctcttggtggttttgaatcataagttcattgttgttccttattctctccatgactt |
200 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
32598207 |
tttcaaatgttttaaggtattgggtggtagggtactgtctcaatctcttggtggttttgaatcataagttcattgttgtttcttattctctcaatgactt |
32598306 |
T |
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| Q |
201 |
tctaataagaatcctatgatgacacga |
227 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
32598307 |
cctaataagaatcctataatgacacga |
32598333 |
T |
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