View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_5 (Length: 560)
Name: NF8438_low_5
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 12 - 545
Target Start/End: Complemental strand, 52988172 - 52987625
Alignment:
| Q |
12 |
agatgaaatatctattgacatcataaccgagcacgttgaattagcctcgatgcatggttgttcaagtctggcagagaaagaaaaagattcttgtacagac |
111 |
Q |
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| T |
52988172 |
agatgaaatatctattgacatcataaccgagcacgttgaattagcctcgatgcatggttgttcaaatctggcagagaaagaaaaagattcttgtaaagac |
52988073 |
T |
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| Q |
112 |
tgccccaaattgcctgttgtgtgtggtggctgtgagggtccaaatgagagggaagttagtccatgttgcaagaatgagggctattcaaaggaatcgatcg |
211 |
Q |
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| T |
52988072 |
tgccccaaattgcctgttgtgtgtggtggctgtgagggtccaaatgagagggaagttagtccatgttgcaagaatgagggctattcaaaggaatcgatag |
52987973 |
T |
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| Q |
212 |
aatcgtcaattatgcatgcttgcattagttttgacaagagagaagttggtggatgttgcaagagctacatgaaggaatgctgtggcaggcatggacattc |
311 |
Q |
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| T |
52987972 |
aatcgtcaattatgcatgcttgcattagttttgacaagagagaagttggtggatgttgcaagagctacatgaaggaatgctgtggcaggcatggacattc |
52987873 |
T |
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| Q |
312 |
aggggctggtagttttgtaggtttatcagaaattgttacagaataggtgtaactgactccaggcagcataagcaacaaagttagcaatcttgtttatgca |
411 |
Q |
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| T |
52987872 |
aggggctggtagtttcgtaggtttatcagaaattgttacagaataggtgtaactgactccaggcagcataagcaacaaagttagcaatcttgtttatgca |
52987773 |
T |
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| Q |
412 |
cattaatgtttaccatat--------------ggaaaactttaaataaataattgcaattggttatatttaataggctacaacatcttgatcttgataca |
497 |
Q |
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| T |
52987772 |
aattaatgtttaccatatggaataacaaatatggaaaactttaaataaataattgcaattggttatatttaataggctacaacatcttgatcttgataca |
52987673 |
T |
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| Q |
498 |
gggaccagaattgtgggatgaatagatgatagttttttatgcaaacat |
545 |
Q |
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| T |
52987672 |
gggaccagaattgtgggatgaatagatgatagttttttatgcaaacat |
52987625 |
T |
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