View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_7 (Length: 528)
Name: NF8438_low_7
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Original strand, 2242639 - 2243138
Alignment:
| Q |
19 |
aatgttagttctgctgttgctttgaatattgtggcatatgggaatcacatattctaaagacactagctggcttttcttgacatattggattaaatctcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2242639 |
aatgttagttctgctgttgctttgaatattgtggcatatgggaatcacatattctaaagacactagctggcttttcttgacatattggattaaatctcaa |
2242738 |
T |
|
| Q |
119 |
cctacaatgtaaacttctctaaacagtatagctgaccacttttattagggactttaataagagtacgttgcttatttgcggctgattcgattgttctgtt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2242739 |
cctacaatgtaaacttctctaaacagtatagctgaccacttttattagggactgtaataagagtacgttgcttatttgcggctgattcgattgttctgtt |
2242838 |
T |
|
| Q |
219 |
tgtttcgaatttggggctaccgatatcggcaacacatacaatggttggcgcagtaatgggagttggaatttggtgaaggggattggcaaaggatgaaatt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2242839 |
tgtttcgaatttggggctaccgatatcggcaacacatacaatggttggcgcagtaatgggagttggaatttggtgaaggggattggcaagggatgaaatt |
2242938 |
T |
|
| Q |
319 |
tttggtgtttggtttgtatgccaagatgtgattccaaatgacagtgaagaaattgcaatcatgttacttttctctggataagttgaaataacttagcaat |
418 |
Q |
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| T |
2242939 |
tttggtgtttggtttgtatgccaagatgtgattccaaatgacagtgaagaaattgcaatcatgttacttttctctagataagttgaaataacttagcaat |
2243038 |
T |
|
| Q |
419 |
ccttagactttgaaggatgaaagttcagagaaaatattnnnnnnnngtttctatctatgtacttcataaattcctttaacctttttctgtttttccttat |
518 |
Q |
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| T |
2243039 |
ccttagactttgaaggatgaaagttcagagaaaatatttaaaaaaagtttctatctatgtacttcataaattcctttaacctttttctgtttttccttat |
2243138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 299 - 518
Target Start/End: Original strand, 31780117 - 31780345
Alignment:
| Q |
299 |
gattggcaaaggatgaaatttttggtgtttggtttgtatgccaaga-tgtgattccaaatga------cagtgaagaaattgcaatcatgttacttttct |
391 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| | |||||||||||||| | ||||||||||| || |
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| T |
31780117 |
gattggcaagggatgaaatttttggtgtttggtttgtatgtgaagactgtgattccaaattaatgacacagtgaagaaattgtagacatgttacttt-ct |
31780215 |
T |
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| Q |
392 |
ctggataagttgaaataa----cttagcaatccttagactttgaaggatgaaagttcagagaaaatattnnnnnnnngtttctatctatgtacttcataa |
487 |
Q |
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| T |
31780216 |
ctaggtaagtggaaataaataacttggcaatccttagactttgaaggatgaaagttcagagaaaatatttaaaaaaagtttctatgtatgtacttcataa |
31780315 |
T |
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| Q |
488 |
attcctttaacctttttctgtttttccttat |
518 |
Q |
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| T |
31780316 |
attcctttaaccttttt-tgtttttccttat |
31780345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 298 - 452
Target Start/End: Original strand, 29057137 - 29057292
Alignment:
| Q |
298 |
ggattggcaaaggatgaaatttttggtgtttggtttgtatgccaaga-tgtgattccaaatgacagtgaagaaattgcaatcatgttacttttctctgga |
396 |
Q |
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|||||||||| ||||||||||||||||||||| ||| |||| |||| ||||||| || | || | ||| ||||||||| |||||||||||||| | | |
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| T |
29057137 |
ggattggcaagggatgaaatttttggtgtttgatttctatgtgaagactgtgattgcagaagagactgatgaaattgcagacatgttacttttctgtagc |
29057236 |
T |
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| Q |
397 |
taagttgaaataacttagcaatccttagactttgaaggatgaaagttcagagaaaa |
452 |
Q |
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| T |
29057237 |
taagttgaaataatttagcaatcgttagactttgaaggatgaaaattcagagaaaa |
29057292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 285
Target Start/End: Original strand, 29056806 - 29056898
Alignment:
| Q |
193 |
tttgcggctgattcgattgttctgtttgtttcgaatttggggctaccgatatcggcaacacatacaatggttggcgcagtaatgggagttgga |
285 |
Q |
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|||||||||| ||| |||||||||||| ||| || | |||||||||||||||| |||||||| | ||||| |||||||||||||||||| |
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| T |
29056806 |
tttgcggctgcttcagttgttctgtttgcttcaaagctagggctaccgatatcggggacacatacgctagttggtgcagtaatgggagttgga |
29056898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 34860480 - 34860401
Alignment:
| Q |
22 |
gttagttctgctgttgctttgaatattgtggcatatgggaatcacatattctaaagacactagctggcttttcttgacat |
101 |
Q |
| |
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|||||||||| |||| ||||||||||||||||| | || |||| ||||||||||| | |||||||||| |||||||| |
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| T |
34860480 |
gttagttctgttgttaatttgaatattgtggcatgtaagagtcacctattctaaagatattagctggcttgccttgacat |
34860401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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