View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_8 (Length: 473)
Name: NF8438_low_8
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_8 |
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| [»] scaffold0248 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 420
Target Start/End: Complemental strand, 3145997 - 3145593
Alignment:
| Q |
16 |
aagtattgatgcttggatgtgagcatttgatttcagtttttcttcaacgatctcaaagaatgaaaacaaaactgtcttgttttctagtttttgcaacatc |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3145997 |
aagtattgatgcttggatatgagcatttgatttcagtttttcttcaacgatctcaaagaatgaaaacaaaactgtcttgttttctagttattgcaacatc |
3145898 |
T |
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| Q |
116 |
cttgaaaccttgtttccagatcactctaaggctcttgttctctagttaatctttgtgcttcaagctgatatgtggttgaaacttgaaactgtagttgagc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| |
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| T |
3145897 |
cttgaaaccttgtttccagatcactctaaggctcttgttctctagttaatctttgtgcttcaagttgatatgtggtatatacttgaaactgtagttgagt |
3145798 |
T |
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| Q |
216 |
aagacttttttgagaatcgacttgcttcatcacgtgtatatgcttaataagnnnnnnnntggcattaatttggtctgtttatcaagttttaactacttga |
315 |
Q |
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| T |
3145797 |
aagacatttttgagaatcgactcgcttcatcatgtgtatatgcttaataagaaaaaaaatggcattaatttggtctgtttatcaagttttaactacttga |
3145698 |
T |
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| Q |
316 |
cagtgtgagtataaagggtatgacagattagtttctcaactaatgtgtgggaaaatgtaccataagaaatagaaatgttaaattatgaaaaataacatga |
415 |
Q |
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| T |
3145697 |
cagtgtgagtataaagggtatgacagattagtttctcaactaatgtgtgggaaaatgtaccataagaaatagaaatgttaaattatgaaaaataacatga |
3145598 |
T |
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| Q |
416 |
catta |
420 |
Q |
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| T |
3145597 |
catta |
3145593 |
T |
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Target: scaffold0248 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 18048 - 18092
Alignment:
| Q |
390 |
atgttaaattatgaaaaataacatgacattaatcaatacatatat |
434 |
Q |
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| T |
18048 |
atgttaaaatatgaaaaataacatgacattaattagtacatatat |
18092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 28910368 - 28910312
Alignment:
| Q |
16 |
aagtattgatgcttggatgtgagcatttgatttcagtttttcttcaacgatctcaaa |
72 |
Q |
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|||||||| |||||| || | || |||||||||||||||| ||||||| |||||||| |
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| T |
28910368 |
aagtattgttgcttgcatatcagtatttgatttcagttttccttcaacaatctcaaa |
28910312 |
T |
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