View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8438_low_9 (Length: 452)
Name: NF8438_low_9
Description: NF8438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8438_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 7 - 438
Target Start/End: Original strand, 6151576 - 6152007
Alignment:
| Q |
7 |
agataatactgtgagagctctatgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaacc |
106 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6151576 |
agatattactgtgagagctctatgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaacc |
6151675 |
T |
|
| Q |
107 |
aacatagtgaagaaactaacccacatcgtgatgcagtatatctaagactttttgggagaaatattagcattatcaatggaggacccagaagtgtatcgtc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
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| T |
6151676 |
aacatagtgaagaaactaacccacatcgtgatgcagtatatctaagactttttgggacaaatattagcattatcaatggaggacccagaattgtattgtt |
6151775 |
T |
|
| Q |
207 |
catcccggttattggaggacaaactggagctagacctactgaacctgctgcaggatctgattttcaaagaagtggagttgttgcaggaaacagtagtaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6151776 |
catcccggttattggaggacaaactggagctagacctactgaacctgttgcaggatctgattttcaaagaagtggagttgttgcaggaaacagtagtaat |
6151875 |
T |
|
| Q |
307 |
gtgaattccatttcatcattcagcgatggaattaaccccactgctactggtactagaaatgatgagttgtttcgtgctagttcacggttaaagagaagta |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6151876 |
gtgaattccatttcatcattcagcgatggaattaaccccactgctactggtactagaaatgatgagttgtttcgtgctagttcacggttaaagagaagta |
6151975 |
T |
|
| Q |
407 |
gatcacctgatccattaactagaggtgaaact |
438 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |
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| T |
6151976 |
gatcacatgatccattaactagaggtgaaact |
6152007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 29 - 438
Target Start/End: Original strand, 6145178 - 6145587
Alignment:
| Q |
29 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacatagtgaagaaactaaccc |
128 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |||||||| || ||| |
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|
| T |
6145178 |
tgatatatggttgttgttatggcgtgcatgcaggtaagaagctataaaatatggccaaccaataccattttggaaaccaacgtaatgaagaaagtagccc |
6145277 |
T |
|
| Q |
129 |
acatcgtgatgcagtatatctaagactttttgggagaaatattagcattatcaatggaggacccagaagtgtatcgtccatcccggttattggaggacaa |
228 |
Q |
| |
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| ||||| |||||| |||||| ||||||||||| ||||||| ||||||||||||||||| | |||||| | ||||||| |||| ||||||||||||| |
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| T |
6145278 |
atatcgtaatgcagcatatcttagactttttggatcaaatattcgcattatcaatggaggatcaagaagtctgtcgtccaccccgactattggaggacaa |
6145377 |
T |
|
| Q |
229 |
actggagctagacctactgaacctgctgcaggatctgattttcaaagaagtggagttgttgcaggaaacagtagtaatgtgaattccatttcatcattca |
328 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
6145378 |
actggagctggacctactgaacctgctgcaagatctgattatccaagaagtggagttgttgcaggaaacaatagtaatgtgaattccatttcgtcattca |
6145477 |
T |
|
| Q |
329 |
gcgatggaattaaccccactgctactggtactagaaatgatgagttgtttcgtgctagttcacggttaaagagaagtagatcacctgatccattaactag |
428 |
Q |
| |
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|||||||| |||| ||||| ||| ||||||||| |||||||||||||||||||||| |||| ||| ||||| || ||||||||||||||||| ||||| |
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| T |
6145478 |
acgatggaactaacaccactactattggtactaggaatgatgagttgtttcgtgctaattcattgttcaagaggaggagatcacctgatccattcactag |
6145577 |
T |
|
| Q |
429 |
aggtgaaact |
438 |
Q |
| |
|
|||||||||| |
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|
| T |
6145578 |
aggtgaaact |
6145587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 29 - 438
Target Start/End: Original strand, 6125739 - 6126168
Alignment:
| Q |
29 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacatagtgaagaaactaa--- |
125 |
Q |
| |
|
|||||||||||||||||||| | ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |
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|
| T |
6125739 |
tgatatatggttgttgttatggagtgcatgtaggaaagaagctataaaatatggccaaccaataccgtttaggaaaccagcataatgaagaaattaaaga |
6125838 |
T |
|
| Q |
126 |
--cccacatcgtgatgcagtatatctaagactttttgggagaaatattagcattatcaatggaggacccagaa---------------gtgtatcgtcca |
208 |
Q |
| |
|
|||| || || ||||||||||||||||||||||||| |||||| |||||||||||| |||| | |||| |||| |||||| |
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|
| T |
6125839 |
agcccatattgtaatgcagtatatctaagactttttggatcgaatatttgcattatcaatgaaggatcgagaaatgaaggatcgagaagtgtgccgtcca |
6125938 |
T |
|
| Q |
209 |
tcccggttattggaggacaaactggagctagacctactgaacctgctgcaggatctgattttcaaagaagtggagttgttgcaggaaacagtagtaatgt |
308 |
Q |
| |
|
||| | ||| |||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||| | |||||| |||||| | ||||||||| |
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|
| T |
6125939 |
tcctgactatcggaggataaactggagctagacttactgaacctgctggaggatctaattatcaaagaagtgcatttgttggaggaaataatagtaatgt |
6126038 |
T |
|
| Q |
309 |
gaattccatttcatcattcagcgatggaattaaccccactgctactggtactagaaatgatgagttgtttcgtgctagttcacggttaaagagaagtaga |
408 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| ||| | ||| ||||||||| |||||||||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
6126039 |
gaattccatttcgtcattcaacgatgaaattaacaccattactattggtactaggaatgatgagttgtttcgtgctaattcattgttaaagagaaataga |
6126138 |
T |
|
| Q |
409 |
tcacctgatccattaactagaggtgaaact |
438 |
Q |
| |
|
||||| |||||||| | ||||||||||||| |
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|
| T |
6126139 |
tcacccgatccattcattagaggtgaaact |
6126168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 265 - 438
Target Start/End: Complemental strand, 33803100 - 33802927
Alignment:
| Q |
265 |
gattttcaaagaagtggagttgttgcaggaaacagtagtaatgtgaattccatttcatcattcagcgatggaattaaccccactgctactggtactagaa |
364 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||| |||||||||| |||||| |||| ||||||| ||||| ||||||| ||||| |||||||| |||| | |
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|
| T |
33803100 |
gattatcaaagaagtggagatgttgtaggaaatagtagtaatgctaattccgtttcgtcattcaacgatgaaattaacaccactactactggtgctagga |
33803001 |
T |
|
| Q |
365 |
atgatgagttgtttcgtgctagttcacggttaaagagaagtagatcacctgatccattaactagaggtgaaact |
438 |
Q |
| |
|
|||||||||||| || |||| |||| || |||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
33803000 |
atgatgagttgtgtcaggctaattcatcattcaagagaagtagatcgcctgatccattcactagaggtgaaact |
33802927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 265 - 438
Target Start/End: Complemental strand, 33731721 - 33731548
Alignment:
| Q |
265 |
gattttcaaagaagtggagttgttgcaggaaacagtagtaatgtgaattccatttcatcattcagcgatggaattaaccccactgctactggtactagaa |
364 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||| |||||||||| ||||| |||| ||||||| ||||| ||||||| ||||| |||||||| |||| | |
|
|
| T |
33731721 |
gattatcaaagaagtggagatgttgtaggaaatagtagtaatgctaattctgtttcgtcattcaacgatgaaattaacaccactactactggtgctagga |
33731622 |
T |
|
| Q |
365 |
atgatgagttgtttcgtgctagttcacggttaaagagaagtagatcacctgatccattaactagaggtgaaact |
438 |
Q |
| |
|
|||||||||||| || |||| |||| || |||||||||||||| ||||||||||| |||||||| |||||| |
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|
| T |
33731621 |
atgatgagttgtgtcaggctaattcatcattcaagagaagtagatcgcctgatccattcactagaggggaaact |
33731548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 28755297 - 28755444
Alignment:
| Q |
29 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacatagtgaagaaactaaccc |
128 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||| ||||||||||||| || | |||||||| | | | |
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|
| T |
28755297 |
tgatatatggttgttgttatgtagtgcatgcaggtaagaagctacaatctatggccaaccaatatcgtttaggaaaccgtcagaatgaagaaaggatctc |
28755396 |
T |
|
| Q |
129 |
acatcgtgatgcagtatatctaagactttttgggagaaatattagcat |
176 |
Q |
| |
|
| ||| ||||||| ||||| ||| |||||||||| |||||||||||| |
|
|
| T |
28755397 |
atatcatgatgcaatatatttaatactttttgggtcaaatattagcat |
28755444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 33732023 - 33731931
Alignment:
| Q |
29 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaaccaacatagtgaagaaa |
121 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||||||||| | || ||||||||||||||| ||||||||||| | |||| |||||||| |
|
|
| T |
33732023 |
tgatatatggttgctgttatggtgtgcatgcaggtaagaagttgcaatctatggccaaccaatatcgtttaggaaatcgtcataatgaagaaa |
33731931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 33803402 - 33803327
Alignment:
| Q |
29 |
tgatatatggttgttgttatagtgtgaatgcaggtaagaagctataaaatatggccaaccaataccgtttaggaaa |
104 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||| |||||| | || ||||||||||||||| ||||||||||| |
|
|
| T |
33803402 |
tgatatatggttgttgttatggtgtgcatgcaggcaagaagttgcaatctatggccaaccaatatcgtttaggaaa |
33803327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 6138334 - 6138412
Alignment:
| Q |
249 |
acctgctgcaggatctgattttcaaagaagtggagttgttgcaggaaacagtagtaatgtgaattccatttcatcattc |
327 |
Q |
| |
|
|||||||| ||||| ||| | |||||||||||| | ||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
6138334 |
acctgctgtaggatatgactaccaaagaagtggacctcctgcaggaaatagtagtaatgctaattccatttcatcattc |
6138412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 28755803 - 28755712
Alignment:
| Q |
82 |
gccaaccaataccgtttaggaaaccaacatagtgaagaaactaacccacatcgtgatgcagtatatctaagactttttgggagaaatattagca |
175 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||| | || | || |||||||| ||||| |||| |||||||| ||||||||||| |
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|
| T |
28755803 |
gccaaccaataccgtttaggaaaccatcagaatgaagaaaggagcctatattgtgatgcaatatatttaag--tttttgggtcaaatattagca |
28755712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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