View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8439_high_10 (Length: 295)
Name: NF8439_high_10
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8439_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 6453724 - 6453455
Alignment:
| Q |
14 |
tgtagtatcatagattgatacaatattattgttgatttaggagaagggaagcaacatgatggacaaggcaaacaatgctgcccaagatgccacaacatct |
113 |
Q |
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| T |
6453724 |
tgtagcatcatagattgatacaatattattgctgatttaggagaagggaagcaacatgatggacaaggcaaacaatgctgcccaagatgccacaacatct |
6453625 |
T |
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| Q |
114 |
gtgcaagaggtttgaacgtttaactaaacaatttagttatattcgctcaatcttttcaagaggttagacacataaatttgagaaaatgaaagtgattcaa |
213 |
Q |
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| T |
6453624 |
gtgcaagaggtttgaacgtttaactaaacaatttagttatattcgctcaatcttttcaagagattagacacataaatttgagaaaatgaaagtgattcga |
6453525 |
T |
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| Q |
214 |
cataaattactatatgtttcagtgtcgaacacccaacatatttttaatctaaagcgttgatgttacatat |
283 |
Q |
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| T |
6453524 |
cgtaaattactatatgtttcagtgtcgaacacccaacacatttttaatctaaagcgttgatgttacatat |
6453455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 6464467 - 6464291
Alignment:
| Q |
14 |
tgtagtatcatagattgatacaatattattgttgatttaggagaagggaagcaacatgatggacaaggcaaacaatgctgcccaagatgccacaacatct |
113 |
Q |
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| T |
6464467 |
tgtagcatcatagtttgatacgatatttttgctgatttaggagaagggaagcaacatgatggacaaggcaaacaatgctgctcaggctgccaatgcatct |
6464368 |
T |
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| Q |
114 |
gtgcaagaggtttgaacgtttaactaaacaatttagttatattcgctcaatcttttcaagaggttagacacataaat |
190 |
Q |
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| T |
6464367 |
gtgcaagaggtttgaatgtttaactaagaaatttagttatattcgctcaatcttgtcaagaggttagacacataaat |
6464291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 6464260 - 6464177
Alignment:
| Q |
188 |
aatttgagaaaatgaaagtgattcaacataaattactatatgtttcagtgtcgaacacccaacatatttttaatctaaagcgttgatgttacatat |
283 |
Q |
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| T |
6464260 |
aatttgagaaaatgaaagtgattcaacata------------tttcagtgtcgaacacccaacacatttttaatctaaagcgttgatgttacatat |
6464177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 44942758 - 44942708
Alignment:
| Q |
28 |
ttgatacaatattattgttgatttaggagaagggaagcaacatgatggaca |
78 |
Q |
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| T |
44942758 |
ttgatataatattattgatgatttaggagaaggaatgtaacatgatggaca |
44942708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 52950580 - 52950698
Alignment:
| Q |
39 |
ttattgttgatttaggagaagggaagcaacatgatggacaaggcaaacaatgctgcccaagatgccacaacatctgtgcaagaggtttgaacgtttaact |
138 |
Q |
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|||||| |||||||||| || ||||||| ||||||||||||||| | ||||||| | ||| ||||| | ||| |||||||||||||| ||||||| |
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| T |
52950580 |
ttattgctgatttaggaaaaaggaagcagcatgatggacaaggcgagcaatgctactcaatctgccaaagagtcttgccaagaggtttgaacatttaact |
52950679 |
T |
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| Q |
139 |
aaacaatttagttatattc |
157 |
Q |
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| T |
52950680 |
aaacaatttagttatattc |
52950698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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