View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8439_high_17 (Length: 237)

Name: NF8439_high_17
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8439_high_17
NF8439_high_17
[»] chr1 (3 HSPs)
chr1 (1-223)||(17524545-17524767)
chr1 (1-223)||(17658689-17658911)
chr1 (1-223)||(17527683-17527905)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17524767 - 17524545
Alignment:
Q  1 aaatggacagtaatcctcaacaaagtctcagcaccatcagtagcaatctgtccaggtggaataagaggtctcagttcagcaaacccttttgcatacttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17524767 aaatggacagtaatcctcaacaaagtctcagcaccatcagtagcaatctgtccaggtggaataagaggtctcagttcagcaaacccttttgcatacttaa 17524668  T
Q  101 acttccccgtccctcctacaaccgacaatcgcgacatagtacttccaatcttatacaaaccataaaaattcaaactatcaccatactcccctccttcaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17524667 acttccccgtccctcctacaaccgacaatcgcgacatagtacttccaatcttatacaaaccataaaaattcaaactatcaccatactcccctccttcaaa 17524568  T
Q  201 aagtgctgtaaaaaccatcatct 223  Q
    |||||||||||||||||||||||    
T  17524567 aagtgctgtaaaaaccatcatct 17524545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 17658689 - 17658911
Alignment:
Q  1 aaatggacagtaatcctcaacaaagtctcagcaccatcagtagcaatctgtccaggtggaataagaggtctcagttcagcaaacccttttgcatacttaa 100  Q
    ||||||||| | ||||||| ||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||  | |||| ||| |    
T  17658689 aaatggacactcatcctcagcaatgtctcagcaccatcagtggcaatctgtcctggtgggataagaggtctcagttctgcaaaccccctggcattcttga 17658788  T
Q  101 acttccccgtccctcctacaaccgacaatcgcgacatagtacttccaatcttatacaaaccataaaaattcaaactatcaccatactcccctccttcaaa 200  Q
    |||| || || || ||||  || || ||||| ||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  17658789 actttcctgtgccccctattactgataatcgtgacatggtacttcctatcttatacaaaccataaaagttcaagctatctccatattcccctccttcaaa 17658888  T
Q  201 aagtgctgtaaaaaccatcatct 223  Q
     |  ||||| |||||||||||||    
T  17658889 caaggctgtgaaaaccatcatct 17658911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17527905 - 17527683
Alignment:
Q  1 aaatggacagtaatcctcaacaaagtctcagcaccatcagtagcaatctgtccaggtggaataagaggtctcagttcagcaaacccttttgcatacttaa 100  Q
    ||||||||| | ||||||| ||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||  | |||| ||| |    
T  17527905 aaatggacactcatcctcagcaatgtctcagcaccatcagtggcaatctgtcctggtgggataagaggtctcagttctgcaaaccccctggcattcttga 17527806  T
Q  101 acttccccgtccctcctacaaccgacaatcgcgacatagtacttccaatcttatacaaaccataaaaattcaaactatcaccatactcccctccttcaaa 200  Q
    |||| || || || ||||  || || ||||| |||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| |||||||| |||||    
T  17527805 actttcctgtgccccctattactgataatcgtgacatagtacttcctatcttgtacaaaccataaaagttcaagctatctccatattcccctccctcaaa 17527706  T
Q  201 aagtgctgtaaaaaccatcatct 223  Q
     |  ||||| || ||||||||||    
T  17527705 caaggctgtgaataccatcatct 17527683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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