View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8439_high_2 (Length: 475)
Name: NF8439_high_2
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8439_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 2816736 - 2816272
Alignment:
| Q |
1 |
tttgcaggagaatgtgaaggtgttgatagaggagaagaatgaaaatgatactctggacactttgtagatatgcgggctggttcagaccatagtgttggat |
100 |
Q |
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| T |
2816736 |
tttgcaggagaatgtgaaggtgttgatagaggagaagaatgaaaatgatactctggacactttgtagatatgcgggctggttcggaccatagtgtcg-at |
2816638 |
T |
|
| Q |
101 |
ggcataaaaaattatgatgatctatatggtattatgaaataaatttcccatgaaacatagccgatcaatatgtttcgagtcacacgtagaaaggggacat |
200 |
Q |
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| T |
2816637 |
ggcataaaaaattatgatgatctatatggtattatgaaataaatttcccatgaaacatagccgatcaatctgtttcgagtcacacgtagaaaggggacat |
2816538 |
T |
|
| Q |
201 |
tattatgactatgtattttgatttttcctaatttttctgatgaacgacgtatatcggtatttaaataccgtagcaattatgactcccatgacttatatga |
300 |
Q |
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| T |
2816537 |
tattatgactatgtattttgatttttcccaatttttctgacgaacaacgtatatcggtatttaaataccgtagcaattatgactcccatgacttagatga |
2816438 |
T |
|
| Q |
301 |
ctttttatgactttgatgagaaaataaatatgtatgaatatcgaaattgtgtgtgttgaatgaatttaaatgtgtatattggaaccgaatatgtatgaat |
400 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2816437 |
ctttttatgactttgatgagaaaataaatatctatgaatatcgaaattgtgtgtgttgaatgaatttaaatgtgtatattggaaccgaatatgtatgaat |
2816338 |
T |
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| Q |
401 |
gttgatatttgagtcctctttgtaagctttcttcaacccgaatgtaattttaacttatttcatctc |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2816337 |
gttgatatttgagtcctctttgtaagctttcttcaacccgaatataattttaacttatttcatctc |
2816272 |
T |
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