View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8439_high_4 (Length: 412)
Name: NF8439_high_4
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8439_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 42 - 397
Target Start/End: Complemental strand, 31684679 - 31684327
Alignment:
| Q |
42 |
gagaaccaggaaacatgttatctaattggctgttattagtgattcttagattggatactgagttttcaaaacaaacnnnnnnnnnnnctccatagatgaa |
141 |
Q |
| |
|
|||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
31684679 |
gagaacgaggaaaaatgttatctaattggccgttattagtgattcttagattggatactgagttttcaaaacaaa--taaacaaaaactccataaatgaa |
31684582 |
T |
|
| Q |
142 |
tattttaacatttaccttcaacatccctnnnnnnnnnnnnntattaccttcaacaaaattgcagctcttggcggaatttctttaaacatgtctccaccaa |
241 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31684581 |
tattttaacatttaccttcaacatccctcataaaaaaaaa-tattaccttcaacaaaattgcagctgttggcggaatttctttaaacatgtctccaccaa |
31684483 |
T |
|
| Q |
242 |
catagtttaagttttcacttccttgcaaaccatcaacaacatgtggaagatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgc |
341 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31684482 |
catagtttaagttttcacttcctagcaaaccatcaacaacatgtggaagatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgc |
31684383 |
T |
|
| Q |
342 |
catggtccccgtacctcctccaacatcaaccaatgactcgacttcattgaacactc |
397 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31684382 |
catggtccctgtacctcctccaacatcaaccaatgactcgacttcattgaacactc |
31684327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 185 - 397
Target Start/End: Complemental strand, 31711512 - 31711300
Alignment:
| Q |
185 |
ttaccttcaacaaaattgcagctcttggcggaatttctttaaacatgtctccaccaacatagtttaagttttcacttccttgcaaaccatcaacaacatg |
284 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
31711512 |
ttaccttcaacaaaattgcatctgctggtggaatttccttaaacatgtctccaccaacatatcttagcttttcacttccttgcaagccatcaacaacatg |
31711413 |
T |
|
| Q |
285 |
tggaagatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgccatggtccccgtacctcctccaacatcaaccaatgactcgact |
384 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31711412 |
tggaagatcaaacacaatgcactccatttgtgggaatgatttgacaagagtctttgccatggtccccgtacctcctccaacatcaaccaatgactcaact |
31711313 |
T |
|
| Q |
385 |
tcattgaacactc |
397 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31711312 |
tcattgaacactc |
31711300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 185 - 397
Target Start/End: Complemental strand, 31734918 - 31734706
Alignment:
| Q |
185 |
ttaccttcaacaaaattgcagctcttggcggaatttctttaaacatgtctccaccaacatagtttaagttttcacttccttgcaaaccatcaacaacatg |
284 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| |
|
|
| T |
31734918 |
ttaccttcaacagaattgcatcggttggcggaatttctttaaacatgtctccaccaacatagcttagattctcacttccttgcaaaccatcaacaacatg |
31734819 |
T |
|
| Q |
285 |
tggaagatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgccatggtccccgtacctcctccaacatcaaccaatgactcgact |
384 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| ||||| || |||||||||||||||||||||||||| | | |
|
|
| T |
31734818 |
tggtagatcaaacacaatgcactccatttgtgggaatgatttggcaaaagtctttgccatagtccctgttcctcctccaacatcaaccaatgactcaaat |
31734719 |
T |
|
| Q |
385 |
tcattgaacactc |
397 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31734718 |
tcattgaacactc |
31734706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 185 - 397
Target Start/End: Complemental strand, 31714481 - 31714269
Alignment:
| Q |
185 |
ttaccttcaacaaaattgcagctcttggcggaatttctttaaacatgtctccaccaacatagtttaagttttcacttccttgcaaaccatcaacaacatg |
284 |
Q |
| |
|
|||||||||||||||| ||| | ||| |||||| |||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |
|
|
| T |
31714481 |
ttaccttcaacaaaatagcatcagctggaggaattctcttaaacatatctccaccaacatagtttaagttatcacctccttgcaagccatcaacaacatg |
31714382 |
T |
|
| Q |
285 |
tggaagatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgccatggtccccgtacctcctccaacatcaaccaatgactcgact |
384 |
Q |
| |
|
|||||||||||| ||| ||||||| | ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| || | | |
|
|
| T |
31714381 |
tggaagatcaaacacagtgcactctaattgtgggaatgatttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaat |
31714282 |
T |
|
| Q |
385 |
tcattgaacactc |
397 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31714281 |
ccattgaacactc |
31714269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 185 - 380
Target Start/End: Complemental strand, 31703078 - 31702883
Alignment:
| Q |
185 |
ttaccttcaacaaaattgcagctcttggcggaatttctttaaacatgtctccaccaacatagtttaagttttcacttccttgcaaaccatcaacaacatg |
284 |
Q |
| |
|
|||||||||||||||| || || |||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| |
|
|
| T |
31703078 |
ttaccttcaacaaaatggcgtctgttggaggaatttctttaaacatgtctccaccaacatagtttagattctcactaccttgcaagccatcaacaacatg |
31702979 |
T |
|
| Q |
285 |
tggaagatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgccatggtccccgtacctcctccaacatcaaccaatgactc |
380 |
Q |
| |
|
||| |||||||||||| | |||||||||||||||||||||| ||||| | |||||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
31702978 |
tggtagatcaaatacactaaactccatttgtgggaatgatttagcaagggcctttgccatggtccctgtgccacctccaacatcaaccaatgactc |
31702883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 323
Target Start/End: Complemental strand, 30570458 - 30570360
Alignment:
| Q |
225 |
aaacatgtctccaccaacatagtttaagttttcacttccttgcaaaccatcaacaacatgtggaagatcaaatacaatgcactccatttgtgggaatga |
323 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
30570458 |
aaacatgtcacctccaacatattttaagttttcacttccttgtaagccatcaacaacatgtggaagatcaaatacaatgcactcaatgtttgggaatga |
30570360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University