View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8439_high_7 (Length: 316)
Name: NF8439_high_7
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8439_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 35447741 - 35448026
Alignment:
| Q |
16 |
cacaaagatggttggaacattttgagaagagggatgaaggcggttactcagaatcatgtttttgggctgaggtggaggatctttgtcatgatcctgacaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35447741 |
cacaaagatggttggaacattttgagaagagggatgaaggcggttactcagaatcatgtttttgggctgaggtggaggatctttgtcatgatcctgacaa |
35447840 |
T |
|
| Q |
116 |
gccttttgatgatgttaaggaaaaggttgaggccttggaggggtttataagcaagtggcatgagaaaggtgaagttggtaaggatgtgtttttgggggat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35447841 |
gccttttgatgatgttaaggaaaaggttgaggccttggaggggtttataagcaagtggcatgagaaaggtgaagttggtaaggatgtgtttttgggggat |
35447940 |
T |
|
| Q |
216 |
tctacgtttgttaagtggtggaaaacattaccaacccaccataaggaacaatcatgcattaaaagtcttgttgaagtgtaacacag |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
35447941 |
tctacgtttgttaagtggtggaaaacattaccaacccaccataaggaacaatcatgcattagaagtcttgttgaagtgtgacacag |
35448026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 36881972 - 36881739
Alignment:
| Q |
16 |
cacaaagatggttggaacattttgagaagagggatgaaggcggttactcagaatcatgtttttgggctgaggtggaggatctttgtcatgatcctgacaa |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||| |||| | |
|
|
| T |
36881972 |
cacaaagatggttggaacatgctgagaagaggggagaaggtggttactcagagtcatgtttttgggctgaggtggaagatctttctcatgatactgagag |
36881873 |
T |
|
| Q |
116 |
gccttttgatgatgttaaggaaaaggttgaggccttggaggggtttataagcaagtggcatgagaaaggtgaagttggtaaggatgtgtttttgggggat |
215 |
Q |
| |
|
||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||||| || | |
|
|
| T |
36881872 |
ctcttttgaagatgttcaggaaaaagttgaggccttggagggatttataagcaagtgggatgagaatggtgaggttggtaaggatgtgtttttggagggt |
36881773 |
T |
|
| Q |
216 |
tctacgtttgttaagtggtggaaaacattaccaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
36881772 |
tctacgtttgttaagtggtggaaaacactaccaa |
36881739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University