View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8439_low_1 (Length: 517)
Name: NF8439_low_1
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8439_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 98 - 435
Target Start/End: Complemental strand, 28380904 - 28380567
Alignment:
| Q |
98 |
gagtgtttgatctcacggtgaatcaccgcaacttaataaaaactacattttaaaactttaataaaatcagagtgtcatcgagattttgtgaaatcgatta |
197 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
28380904 |
gagtgtttggtctcacggtgaatcaccgcaacttaacaaaaactacattttaaaactttaataaaatcataatgtcatcgagattttgtgaaatcgatta |
28380805 |
T |
|
| Q |
198 |
tgaatccaaacatatgcaataaaaggctataattaggtagctatttcaatagagttcctagcaaatatgggctgcatgttaagaccatgttgcaagtaaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28380804 |
tgaatccaaacatatgcaataaaaggctataattaggtagctatttcaatagagttcctatcaaatatgggctgcatgttaagaccatgttgcaagtaaa |
28380705 |
T |
|
| Q |
298 |
atggattcaagaggaaggcatgtgaaactagtaagtgtcagaaaatgcagggaatggtgtggatgcaagaataaattcttttcaccataacaatggttaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28380704 |
atggattcaagaggaaggcatgtgaaactagtaagtgtcagaaaatgcagggaaaggtgtggatgcaagaataaattcttttcaccataagaatggttaa |
28380605 |
T |
|
| Q |
398 |
cttgaaaaatgtcctttcattcccaacaagtttaacag |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28380604 |
cttgaaaaatgtcctttcattcccaacaagtttaacag |
28380567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 28381015 - 28380933
Alignment:
| Q |
17 |
attataatgcatcttttaattgacgttaatacggtgacatcttgattttgttgaaaatcacattgattacgaatcactgaaga |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28381015 |
attataatgcatcttttaattgacgttaatacggtgacatcttgattttgttgaaaatcacattgattacgaaccactgaaga |
28380933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University