View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8439_low_11 (Length: 306)
Name: NF8439_low_11
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8439_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 12605040 - 12604757
Alignment:
| Q |
1 |
aatatgccaagacctcttacaatctgtcaaaagcaatccacttatattgacgctaagagtaaaactttaaacttcgagtagaaacctttcatgtcgaaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
12605040 |
aatatgccaagacctcttacaatctgtcaaaagcaatccacttatattgacgctaagagtaaaactttaaattttgagtagaaacctttcatgtcgaaca |
12604941 |
T |
|
| Q |
101 |
aacaacattaaaaccacaggctaacacattctctacaaaactactctctcaannnnnnnnaaggatttctctatttttcctctaatcttatccttccaaa |
200 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||| |||||| ||||||||||| ||||||||||||||||| |
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| T |
12604940 |
aacaacgttaaaaccacatgctaacacattctctacaaaaccactctctcaattttttttaagaatttctttatttttcctccaatcttatccttccaaa |
12604841 |
T |
|
| Q |
201 |
gttctcctctcccttccttccaaactccgaaacaaaacctaacttttattaaattataagagtcccgaaacattccgtagaaag |
284 |
Q |
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| T |
12604840 |
gtcttcctctcccttccttccaaacttcgaaacaaaacctaacttttattaaattataagagtcccgaaacattccgtagaaag |
12604757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 49299280 - 49299167
Alignment:
| Q |
16 |
cttacaatctgtcaaaagcaatccact--tatattgacgctaagagtaaaacttt-aaacttcgagtagaaacctttcatgtcgaacaaacaacattaaa |
112 |
Q |
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|||| |||||||| ||| | ||||||| ||||||||| ||||||||||||||| |||||| || |||||| ||||||| ||||||||||||||||||| |
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| T |
49299280 |
cttataatctgtcgaaaaccatccactcctatattgacactaagagtaaaacttccaaactttgactagaaagctttcatatcgaacaaacaacattaaa |
49299181 |
T |
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| Q |
113 |
accacaggctaaca |
126 |
Q |
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| T |
49299180 |
aacacaggctaaca |
49299167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 22845117 - 22845048
Alignment:
| Q |
174 |
tttttcctctaatcttatccttccaaagttctcctctccctt-ccttccaaactccgaaacaaaacctaa |
242 |
Q |
| |
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||||||||||||||| |||| ||||||| |||| ||||||| || |||||||||| ||||||| ||||| |
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| T |
22845117 |
tttttcctctaatctcatccctccaaagccctcccctcccttcccctccaaactcccaaacaaagcctaa |
22845048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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