View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8439_low_13 (Length: 275)

Name: NF8439_low_13
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8439_low_13
NF8439_low_13
[»] chr2 (24 HSPs)
chr2 (30-266)||(2381111-2381347)
chr2 (143-266)||(31061356-31061479)
chr2 (142-266)||(45257303-45257427)
chr2 (143-266)||(34187572-34187695)
chr2 (146-228)||(42296465-42296547)
chr2 (144-229)||(1270439-1270524)
chr2 (192-266)||(22356011-22356085)
chr2 (148-266)||(3094477-3094595)
chr2 (195-266)||(45098218-45098289)
chr2 (146-215)||(22356179-22356248)
chr2 (146-266)||(17333935-17334056)
chr2 (143-215)||(23748270-23748342)
chr2 (148-215)||(36046377-36046443)
chr2 (146-215)||(36347716-36347785)
chr2 (144-213)||(41778771-41778840)
chr2 (193-229)||(1052917-1052953)
chr2 (143-215)||(9631735-9631807)
chr2 (153-229)||(31928210-31928286)
chr2 (144-215)||(15224869-15224940)
chr2 (154-266)||(33265615-33265726)
chr2 (140-266)||(16713486-16713612)
chr2 (198-264)||(23739882-23739948)
chr2 (146-211)||(35736175-35736240)
chr2 (144-212)||(35736365-35736433)
[»] chr7 (28 HSPs)
chr7 (144-266)||(37925839-37925961)
chr7 (146-266)||(36267677-36267797)
chr7 (144-266)||(33519046-33519168)
chr7 (147-266)||(12682853-12682972)
chr7 (143-215)||(39856040-39856112)
chr7 (146-266)||(39646469-39646589)
chr7 (148-266)||(37620776-37620894)
chr7 (147-266)||(12670960-12671079)
chr7 (149-215)||(43230239-43230305)
chr7 (164-259)||(48013521-48013615)
chr7 (144-217)||(1051671-1051744)
chr7 (197-263)||(35422015-35422081)
chr7 (147-215)||(31571645-31571713)
chr7 (148-229)||(16833684-16833767)
chr7 (144-215)||(28074101-28074172)
chr7 (146-229)||(36267553-36267636)
chr7 (146-213)||(47390855-47390922)
chr7 (144-214)||(4833529-4833599)
chr7 (146-229)||(28074267-28074352)
chr7 (193-226)||(48147404-48147437)
chr7 (146-215)||(48881558-48881627)
chr7 (143-215)||(4835476-4835548)
chr7 (139-215)||(13770941-13771017)
chr7 (143-215)||(13771121-13771193)
chr7 (141-213)||(24970342-24970414)
chr7 (146-186)||(25887192-25887232)
chr7 (146-214)||(33519224-33519292)
chr7 (149-213)||(33655285-33655349)
[»] chr4 (28 HSPs)
chr4 (144-266)||(56135747-56135869)
chr4 (143-229)||(7977658-7977744)
chr4 (142-266)||(29993895-29994019)
chr4 (146-266)||(17182609-17182729)
chr4 (141-266)||(22186714-22186839)
chr4 (144-215)||(49735466-49735537)
chr4 (148-266)||(47846179-47846298)
chr4 (188-266)||(43961452-43961530)
chr4 (142-217)||(54935063-54935139)
chr4 (194-266)||(34995099-34995171)
chr4 (146-229)||(54576490-54576573)
chr4 (148-264)||(55080581-55080697)
chr4 (143-229)||(6938408-6938494)
chr4 (143-215)||(1968534-1968606)
chr4 (142-213)||(21695065-21695136)
chr4 (144-211)||(31348500-31348567)
chr4 (146-217)||(44145773-44145844)
chr4 (149-212)||(46007879-46007942)
chr4 (143-214)||(54320432-54320502)
chr4 (143-217)||(37761462-37761536)
chr4 (188-229)||(32192849-32192890)
chr4 (146-215)||(54320609-54320678)
chr4 (181-266)||(4437549-4437633)
chr4 (148-226)||(47846427-47846505)
chr4 (166-215)||(31348341-31348390)
chr4 (146-215)||(54935244-54935313)
chr4 (197-229)||(5824952-5824984)
chr4 (146-214)||(47433885-47433953)
[»] chr8 (20 HSPs)
chr8 (144-266)||(12022267-12022389)
chr8 (142-229)||(9434461-9434547)
chr8 (143-229)||(8815302-8815388)
chr8 (145-227)||(7394624-7394706)
chr8 (144-229)||(43732677-43732762)
chr8 (149-266)||(20472816-20472933)
chr8 (144-215)||(1027023-1027094)
chr8 (143-228)||(9933237-9933322)
chr8 (147-264)||(43826333-43826450)
chr8 (146-215)||(43732862-43732931)
chr8 (197-266)||(8671918-8671987)
chr8 (77-147)||(40200481-40200548)
chr8 (146-217)||(30365130-30365201)
chr8 (146-213)||(31543249-31543316)
chr8 (143-215)||(31543069-31543141)
chr8 (193-266)||(39449351-39449424)
chr8 (193-266)||(6453229-6453304)
chr8 (148-266)||(16024155-16024274)
chr8 (146-215)||(2248452-2248521)
chr8 (192-228)||(38021495-38021531)
[»] chr3 (24 HSPs)
chr3 (152-266)||(10943738-10943852)
chr3 (143-266)||(17474330-17474453)
chr3 (143-266)||(41414075-41414198)
chr3 (144-266)||(24253719-24253842)
chr3 (148-229)||(44412522-44412603)
chr3 (181-266)||(34641027-34641112)
chr3 (188-266)||(40858607-40858685)
chr3 (193-266)||(16884095-16884168)
chr3 (149-266)||(21090195-21090312)
chr3 (193-266)||(26135844-26135917)
chr3 (144-266)||(44412359-44412481)
chr3 (158-226)||(18086150-18086218)
chr3 (181-266)||(46978462-46978547)
chr3 (193-266)||(48683659-48683732)
chr3 (144-215)||(34641165-34641236)
chr3 (141-215)||(28582684-28582758)
chr3 (148-214)||(42772046-42772112)
chr3 (146-215)||(24253897-24253966)
chr3 (143-215)||(41110496-41110568)
chr3 (144-215)||(24560215-24560286)
chr3 (144-215)||(30200266-30200341)
chr3 (188-266)||(8432383-8432461)
chr3 (193-225)||(27197814-27197846)
chr3 (197-229)||(51861691-51861723)
[»] chr5 (24 HSPs)
chr5 (144-266)||(10204574-10204696)
chr5 (144-266)||(15986748-15986870)
chr5 (148-266)||(34980812-34980930)
chr5 (181-266)||(5688448-5688533)
chr5 (146-263)||(21580947-21581064)
chr5 (143-266)||(10043249-10043372)
chr5 (148-266)||(8551542-8551660)
chr5 (144-262)||(40305793-40305911)
chr5 (144-211)||(13634709-13634776)
chr5 (144-215)||(14245086-14245157)
chr5 (144-260)||(33744323-33744439)
chr5 (144-215)||(26414891-26414962)
chr5 (147-217)||(13634884-13634954)
chr5 (148-215)||(1657988-1658055)
chr5 (150-209)||(2550533-2550592)
chr5 (144-215)||(7544134-7544205)
chr5 (146-216)||(10476202-10476272)
chr5 (143-215)||(8502832-8502904)
chr5 (146-215)||(14245221-14245290)
chr5 (146-215)||(16938479-16938548)
chr5 (188-228)||(6597944-6597984)
chr5 (153-229)||(10043413-10043489)
chr5 (143-215)||(11436936-11437008)
chr5 (142-186)||(20147074-20147118)
[»] chr6 (17 HSPs)
chr6 (143-266)||(23090992-23091115)
chr6 (146-266)||(15323225-15323345)
chr6 (146-229)||(15353364-15353447)
chr6 (149-215)||(4097688-4097754)
chr6 (146-228)||(10293250-10293332)
chr6 (188-266)||(26318347-26318425)
chr6 (143-228)||(9051696-9051779)
chr6 (144-215)||(14515471-14515542)
chr6 (142-213)||(30487302-30487373)
chr6 (142-215)||(9721134-9721207)
chr6 (148-217)||(25468564-25468633)
chr6 (143-215)||(10818226-10818298)
chr6 (193-229)||(15373738-15373774)
chr6 (193-229)||(34177061-34177097)
chr6 (142-215)||(9719027-9719100)
chr6 (147-212)||(9719208-9719273)
chr6 (147-215)||(10818391-10818459)
[»] chr1 (21 HSPs)
chr1 (139-266)||(1085614-1085741)
chr1 (144-229)||(51303382-51303467)
chr1 (146-266)||(33643268-33643388)
chr1 (142-226)||(35927810-35927894)
chr1 (149-266)||(40709416-40709532)
chr1 (146-229)||(525261-525344)
chr1 (141-215)||(35349637-35349711)
chr1 (143-215)||(12234007-12234079)
chr1 (183-266)||(2506576-2506659)
chr1 (153-215)||(2859107-2859169)
chr1 (144-214)||(40095110-40095180)
chr1 (143-213)||(41498401-41498471)
chr1 (146-215)||(30010332-30010401)
chr1 (146-215)||(38509894-38509963)
chr1 (146-214)||(2858932-2859000)
chr1 (154-229)||(23536849-23536924)
chr1 (150-213)||(35512974-35513037)
chr1 (195-266)||(25268313-25268384)
chr1 (146-215)||(40094933-40095002)
chr1 (143-207)||(20607400-20607464)
chr1 (193-266)||(52707692-52707765)
[»] scaffold0026 (2 HSPs)
scaffold0026 (143-229)||(1559-1645)
scaffold0026 (149-215)||(1175-1241)
[»] scaffold0119 (2 HSPs)
scaffold0119 (144-229)||(30713-30798)
scaffold0119 (144-266)||(37381-37503)
[»] scaffold0067 (1 HSPs)
scaffold0067 (142-215)||(39365-39438)
[»] scaffold0095 (1 HSPs)
scaffold0095 (193-266)||(8194-8267)
[»] scaffold0240 (1 HSPs)
scaffold0240 (144-229)||(17701-17784)
[»] scaffold0262 (1 HSPs)
scaffold0262 (144-213)||(16294-16363)
[»] scaffold0198 (1 HSPs)
scaffold0198 (149-214)||(3150-3215)
[»] scaffold0007 (1 HSPs)
scaffold0007 (150-215)||(242391-242456)
[»] scaffold0096 (1 HSPs)
scaffold0096 (146-214)||(6584-6652)
[»] scaffold0012 (1 HSPs)
scaffold0012 (181-213)||(184636-184668)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 30 - 266
Target Start/End: Complemental strand, 2381347 - 2381111
Alignment:
Q  30 tttagtcatatacgggaatgtcatatatatgttgaacgtatcaaacgtgggcattcatgattccaatgacaacctttaaaaactcaaatctcttcttaat 129  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2381347 tttagttatatacgggaatgtcatatatatgttgaacgtatcaaacgtgggcattcatgattccaatgacaacctttaaaaactcaaatctcttcttaat 2381248  T
Q  130 tacctcaatgttattaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||    
T  2381247 tacctcaatgttattaagggtgtatttggattgtgggtttatgagggaatgggaggggagagttcacttttattttttaaattacgaacaatgtaaaatg 2381148  T
Q  230 nnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
           |||||| |||||||||||||||||||||||    
T  2381147 tttttttaaaataaattaagtgtttttgaagtattat 2381111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 31061356 - 31061479
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaata 242  Q
    ||||||||||||||||||||  |||||| ||||| |  ||| || |||| ||||||||||||||||||||||||| |||||||||||       ||||||    
T  31061356 ttaagggtgtgtttggattgaaggtttaggaggggaaaggatgggagggctcacttttattttttaaattacgaacaatgtaaaatgtgtttttaaaata 31061455  T
Q  243 gattaagtgtttttgaagtattat 266  Q
     |||||||||||||||| ||||||    
T  31061456 aattaagtgtttttgaaatattat 31061479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 266
Target Start/End: Original strand, 45257303 - 45257427
Alignment:
Q  142 attaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaat 241  Q
    ||||||||||||||||||||| | ||||| ||||| |  ||| || |||  ||||||||||||| ||||||||||| |||||||||||       |||||    
T  45257303 attaagggtgtgtttggattgagagtttaggaggggaaaggaagggaggactcacttttattttataaattacgaacaatgtaaaatgttttcttaaaat 45257402  T
Q  242 agattaagtgtttttgaagtattat 266  Q
    | |||||||||||||||||||||||    
T  45257403 aaattaagtgtttttgaagtattat 45257427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 34187572 - 34187695
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaata 242  Q
    |||||||||||||||||||| | ||||| ||| | | || |||| | |||||||||||| ||||||||||||||| || |||| |||       ||||||    
T  34187572 ttaagggtgtgtttggattgagagtttaggagtggaaggaaggggaaggttcacttttaatttttaaattacgaacaacgtaagatgttttattaaaata 34187671  T
Q  243 gattaagtgtttttgaagtattat 266  Q
     |||||||||||||||||||||||    
T  34187672 aattaagtgtttttgaagtattat 34187695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 42296547 - 42296465
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaat 228  Q
    ||||||||||||||||| ||| ||| ||||| | ||||||  ||||||||||||||||||||||||||||||  |||||||||    
T  42296547 agggtgtgtttggattgagggattaggaggggaagggaggagagggttcacttttattttttaaattacgaacgatgtaaaat 42296465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 1270524 - 1270439
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    |||||||| |||||||||| || |||| ||||  | ||||||| |||| ||||||||||||||||||||||||| |||||||||||    
T  1270524 taagggtgcgtttggattgaggatttaggaggacaagggaggggagggctcacttttattttttaaattacgaacaatgtaaaatg 1270439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 22356011 - 22356085
Alignment:
Q  192 ttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||| ||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||    
T  22356011 ttcatttttattttttaaattacgaacaatgtaaaatgtttttttaaaatagattaagtgtttttgaagtattat 22356085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 3094595 - 3094477
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagatta 247  Q
    ||||||||||||||| ||||||| || |||| ||||||| | |  |||||||||||||||||||||| ||  ||||||||||       |||||| |||     
T  3094595 ggtgtgtttggattgagggtttaggaaggaaagggaggggaagactcacttttattttttaaattacaaactatgtaaaatgtttttctaaaataaattt 3094496  T
Q  248 agtgtttttgaagtattat 266  Q
     ||||||||||||||||||    
T  3094495 cgtgtttttgaagtattat 3094477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 45098218 - 45098289
Alignment:
Q  195 acttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||||||||||||| ||||| ||||||||||||||       |||||| |||||||||||||||||||||||    
T  45098218 acttttattttttacattacaaataatgtaaaatgtatttttaaaataaattaagtgtttttgaagtattat 45098289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 22356248 - 22356179
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||| || |||| ||||| | ||||||| |||||||| |||| ||||||||||||||    
T  22356248 agggtgtgtttggattgaggatttaggaggggaagggaggggagggttcatttttcttttttaaattacg 22356179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 17334056 - 17333935
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaa-ttacgaataatgtaaaatgnnnnnnnaaaataga 244  Q
    ||||||| |||| |||| ||||||| ||||| | || |||| |||  ||||||||||||||| || |||| || |||||||||||       |||||| |    
T  17334056 agggtgtttttgaattgagggtttaggaggggaaggaaggggaggactcacttttatttttttaagttacaaacaatgtaaaatgtctttttaaaataaa 17333957  T
Q  245 ttaagtgtttttgaagtattat 266  Q
    ||||||||||||||||||||||    
T  17333956 ttaagtgtttttgaagtattat 17333935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 23748342 - 23748270
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||||||| | ||||||| ||||| | ||||||| |||||||||||||  |||||||| ||||    
T  23748342 ttaagggtgtgtttggatggagggtttaggaggggaagggaggggagggttcacttttcatttttaaactacg 23748270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 36046443 - 36046377
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||| ||||||||||||| | ||||||| | |||| |||||| ||||||||||||||    
T  36046443 ggtgtgtttggattgagggtttatgaggggaagggagggga-ggtttacttttgttttttaaattacg 36046377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 36347785 - 36347716
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||| ||||||| ||||| | |||| || || ||| |||||| ||||||||||||||    
T  36347785 agggtgtgtttggattgagggtttaggaggggaagggaagggagagtttacttttcttttttaaattacg 36347716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 41778771 - 41778840
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaatta 213  Q
    ||||||||||||||||||| |||||||  |||||| ||||||| |||||| |||||| |  |||||||||    
T  41778771 taagggtgtgtttggattgagggtttagaagggaaagggaggggagggtttacttttgtactttaaatta 41778840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 1052953 - 1052917
Alignment:
Q  193 tcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1052953 tcacttttattttttaaattacgaacaatgtaaaatg 1052917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 9631807 - 9631735
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||||||| | ||||||| ||||||| |||||   |||||| ||||||  |||||||||||||    
T  9631807 ttaagggtgtgtttggatggagggtttaggagggaaagggagaagagggttaacttttcgtttttaaattacg 9631735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 31928286 - 31928210
Alignment:
Q  153 gtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    |||||||| | ||||||| ||||| | |||| || |||| ||||||||| |||||||||||| || |||||||||||    
T  31928286 gtttggatcgagggtttaggaggggaagggaagggagggctcacttttaatttttaaattacaaacaatgtaaaatg 31928210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 15224940 - 15224869
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||||||   ||||||| ||||| | ||||||| | |||| |||||| ||||||||||||||    
T  15224940 taagggtgtgtttggatcaagggtttaggaggggaagggaggggatggtttacttttcttttttaaattacg 15224869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 33265615 - 33265726
Alignment:
Q  154 tttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtt 253  Q
    ||||||||| ||||||| ||||| | ||||||  | |  ||| ||||||||||||||||||||| |||||||||         |||||| ||||||||||    
T  33265615 tttggattgagggtttaggaggggaagggaggcgatgactcatttttattttttaaattacgaacaatgtaaaa-cattttttaaaataaattaagtgtt 33265713  T
Q  254 tttgaagtattat 266  Q
    |||||||||||||    
T  33265714 tttgaagtattat 33265726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 16713486 - 16713612
Alignment:
Q  140 ttattaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaa 239  Q
    ||||||| ||||||||| ||||| ||||||| ||||| | |||| || |  ||||| ||||| ||||||||||||| | ||| ||||||        |||    
T  16713486 ttattaaaggtgtgttttgattgagggtttaagaggggaagggaagggatagttcaattttaatttttaaattacgtacaatataaaatatttttttaaa 16713585  T
Q  240 atagattaagtgtttttgaagtattat 266  Q
    | | |||| ||||||||||||||||||    
T  16713586 agaaattatgtgtttttgaagtattat 16713612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 23739948 - 23739882
Alignment:
Q  198 tttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtatt 264  Q
    |||||||||||||||||||| || ||||||||       |||||| ||||| |||||||||||||||    
T  23739948 tttattttttaaattacgaaaaaagtaaaatgtttttttaaaataaattaaatgtttttgaagtatt 23739882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 35736175 - 35736240
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaat 211  Q
    ||||||||||||||||| ||||||| ||||| | ||||||| |||| | | |||| ||||||||||    
T  35736175 agggtgtgtttggattgagggtttaggaggggaagggaggggaggggttaattttcttttttaaat 35736240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 35736433 - 35736365
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaatt 212  Q
    ||||||||||||||||| | ||||||| ||||  | ||||||| |||| ||||||||  ||||||||||    
T  35736433 taagggtgtgtttggatggagggtttaggaggtgaagggaggggagggctcacttttcgtttttaaatt 35736365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 144 - 266
Target Start/End: Original strand, 37925839 - 37925961
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatag 243  Q
    ||||||||||||||||||| ||||||| ||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||        ||||||    
T  37925839 taagggtgtgtttggattgagggtttaggaggggaagggaggggagggttcacttttattttttaaattacgaacaatgtaaaatgttttttttaaatag 37925938  T
Q  244 attaagtgtttttgaagtattat 266  Q
    |||||||||||||||||||||||    
T  37925939 attaagtgtttttgaagtattat 37925961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 36267797 - 36267677
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagat 245  Q
    ||||||||||||||||| ||||||| ||||| | ||||||| |||| ||| |||||||||||||||||| |  |||||||||||       |||||| |     
T  36267797 agggtgtgtttggattgagggtttaggaggggaagggaggggagggctcatttttattttttaaattacaaccaatgtaaaatgttttttcaaaatatag 36267698  T
Q  246 taagtgtttttgaagtattat 266  Q
    |||||||||||||||||||||    
T  36267697 taagtgtttttgaagtattat 36267677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 266
Target Start/End: Original strand, 33519046 - 33519168
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatag 243  Q
    |||||| |||||||||| | || |||| ||||| | ||||||| |||| ||||||||||||||||||||||||| ||| |||||||        |||||     
T  33519046 taagggagtgtttggatggaggttttaggaggggaagggaggggagggctcacttttattttttaaattacgaacaatataaaatgtttttttgaaataa 33519145  T
Q  244 attaagtgtttttgaagtattat 266  Q
    |||||||||||||||||||||||    
T  33519146 attaagtgtttttgaagtattat 33519168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 266
Target Start/End: Complemental strand, 12682972 - 12682853
Alignment:
Q  147 gggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagatt 246  Q
    |||||||||||||||| || |||| ||| |||   ||||||| || |||||||||||||||||| |||||| |||||||||||        ||||| |||    
T  12682972 gggtgtgtttggattgaggttttaggagcgaaacagagggaaaggctcacttttattttttaaactacgaacaatgtaaaatgtattttttaaataaatt 12682873  T
Q  247 aagtgtttttgaagtattat 266  Q
    ||||||||||||||||||||    
T  12682872 aagtgtttttgaagtattat 12682853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 39856112 - 39856040
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||||||||| ||||||| ||||| | ||||||| |||||| |||||| ||||||||||||||    
T  39856112 ttaagggtgtgtttggattgagggtttaggaggggaagggaggggagggtttacttttcttttttaaattacg 39856040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 266
Target Start/End: Original strand, 39646469 - 39646589
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagat 245  Q
    |||||||||||||||||  |||||| ||| | | ||||||| |||  ||||||||||||||||||||| ||| ||||||||||        |||||| ||    
T  39646469 agggtgtgtttggattgacggtttaggagaggaagggaggggaggaatcacttttattttttaaattatgaacaatgtaaaatatatttttaaaataaat 39646568  T
Q  246 taagtgtttttgaagtattat 266  Q
    ||| |||||||||||||||||    
T  39646569 taactgtttttgaagtattat 39646589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 37620776 - 37620894
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagatta 247  Q
    ||||||||||||||| ||||||  ||||| | ||||||| || ||||||||||  |||| |||||| ||| |||||||||||       |||||| ||||    
T  37620776 ggtgtgtttggattgagggtttgggaggggaagggaggggagagttcactttttattttcaaattatgaacaatgtaaaatgattttttaaaataaatta 37620875  T
Q  248 agtgtttttgaagtattat 266  Q
    | |||||||||||||||||    
T  37620876 aatgtttttgaagtattat 37620894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 266
Target Start/End: Complemental strand, 12671079 - 12670960
Alignment:
Q  147 gggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagatt 246  Q
    |||||||||||||||| || |||| ||| |||   ||||||| |  |||||||||||||||||| |||||| ||||| |||||        ||||  |||    
T  12671079 gggtgtgtttggattgaggttttaggagtgaaacagagggaaagactcacttttattttttaaactacgaacaatgtgaaatgttttttgtaaatgaatt 12670980  T
Q  247 aagtgtttttgaagtattat 266  Q
    ||||||||||||||||||||    
T  12670979 aagtgtttttgaagtattat 12670960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 43230239 - 43230305
Alignment:
Q  149 gtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||| ||||||| ||| ||| || |||| |||||| |||||| ||||||||||||||    
T  43230239 gtgtgtttggattgggggtttaagagagaaaggaaggggagggtttacttttcttttttaaattacg 43230305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 48013521 - 48013615
Alignment:
Q  164 gggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaa 259  Q
    ||||||| ||||| | ||||||| || |||| |||||||||| ||||||||||| |||||||||||       |||||| ||||||||||||||||    
T  48013521 gggtttaggaggggaagggaggggagcgttcgcttttatttt-taaattacgaacaatgtaaaatgtttttttaaaataaattaagtgtttttgaa 48013615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 1051744 - 1051671
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaa 217  Q
    ||||||||||||||||||| ||||||| ||||| | ||||||  ||| || | |||| ||||||||||||||||    
T  1051744 taagggtgtgtttggattgagggtttaggaggggaagggaggagaggatttatttttcttttttaaattacgaa 1051671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 35422015 - 35422081
Alignment:
Q  197 ttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtat 263  Q
    |||||||||||||||||| || |||||||||||       |||||| ||||||||||||||||||||    
T  35422015 ttttattttttaaattacaaacaatgtaaaatgtttttttaaaataaattaagtgtttttgaagtat 35422081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 31571713 - 31571645
Alignment:
Q  147 gggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||||| ||||||| ||||| | | ||||| || ||| |||||| ||||||||||||||    
T  31571713 gggtgtgtttggattgagggtttaggaggggaagcgaggggagagtttacttttcttttttaaattacg 31571645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 16833684 - 16833767
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagggaatgggagg-gaagggt-tcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||| ||||||| ||||||| |||| | | || |  | ||||||||||||||||||||||| |||||||||||    
T  16833684 ggtgtgtttggattgagggtttaagagggaaagggatgagtagagacttacttttattttttaaattacgaacaatgtaaaatg 16833767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 28074101 - 28074172
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||||||||  |||||| ||||| | ||||||| ||   |||||||| ||||||||||||||    
T  28074101 taagggtgtgtttggattgaaggtttaggaggggaagggaggggagaactcacttttcttttttaaattacg 28074172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 36267553 - 36267636
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||| | ||||||| ||||| | ||||||| |||| | | |||| |||||||||||||| ||| | |||||||    
T  36267553 agggtgtgtttggatggagggtttaggaggggaagggaggggagggcttagttttcttttttaaattacggatattataaaatg 36267636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 47390855 - 47390922
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaatta 213  Q
    ||||||||||||||||| ||| ||| ||||| | ||||| | |||||| |||||| ||||||||||||    
T  47390855 agggtgtgtttggattgaggggttaggaggggaagggagtggagggtttacttttcttttttaaatta 47390922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 4833529 - 4833599
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattac 214  Q
    ||||||| ||||||||| | ||||||| ||||| | ||||||| |||||| ||||||  ||||||||||||    
T  4833529 taagggtatgtttggatggagggtttaggaggggaagggaggggagggtttacttttcatttttaaattac 4833599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 28074352 - 28074267
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttatt--ttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||| ||||||| ||| | | || |||| |||| |||||||||||  |||| ||| ||||| |||||||||||    
T  28074352 agggtgtgtttggattgagggtttaggagaggaaggaaggggagggatcacttttatttatttttaatcacgaacaatgtaaaatg 28074267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 48147437 - 48147404
Alignment:
Q  193 tcacttttattttttaaattacgaataatgtaaa 226  Q
    |||||||||||||||||||||| |||||||||||    
T  48147437 tcacttttattttttaaattacaaataatgtaaa 48147404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 48881558 - 48881627
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||| | ||||||| ||||| | ||||||| | || | |||||| ||||||||||||||    
T  48881558 agggtgtgtttggatggagggtttaggaggggaagggaggggatggcttacttttcttttttaaattacg 48881627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 4835476 - 4835548
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||| ||||| ||||||| ||| ||| |||||||  | | | |||||| ||||||||||||||    
T  4835476 ttaagggtgtgtttagattgagggtttaggagagaaagggaggggtgtgcttacttttcttttttaaattacg 4835548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 13770941 - 13771017
Alignment:
Q  139 gttattaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||| ||||||||||||||||| || |||| ||||| | ||||||| ||| || |||| |  |||||||||||||    
T  13770941 gttatttagggtgtgtttggattgaggatttaggaggggaagggaggggaggatttacttattatttttaaattacg 13771017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 13771193 - 13771121
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||| ||||| ||||||| ||||| | ||||||  || ||| ||||||  |||||||||||||    
T  13771193 ttaagggtgtgtttagattgagggtttaggaggggaagggaggtgagagtttacttttcgtttttaaattacg 13771121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 24970414 - 24970342
Alignment:
Q  141 tattaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaatta 213  Q
    |||||| ||||||||||||||| ||||||| |||||  | ||||||||| |||   |||| ||||||||||||    
T  24970414 tattaaaggtgtgtttggattgagggtttaggagggtttaggagggaagagtttgtttttcttttttaaatta 24970342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 25887192 - 25887232
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggaggg 186  Q
    ||||||||||||||||| ||||||||||||| | |||||||    
T  25887192 agggtgtgtttggattgagggtttatgaggggaagggaggg 25887232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 33519292 - 33519224
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattac 214  Q
    ||||||||||||||| | ||||||| ||||| | ||||||| |||| | |||||| || ||||||||||    
T  33519292 agggtgtgtttggatggagggtttaggaggggaagggaggggagggattacttttcttctttaaattac 33519224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 33655349 - 33655285
Alignment:
Q  149 gtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaatta 213  Q
    |||||||||||||| ||||||| ||||| | | ||||  |||||| |||||| ||||||||||||    
T  33655349 gtgtgtttggattgagggtttaggaggggaagagaggcgagggtttacttttcttttttaaatta 33655285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 144 - 266
Target Start/End: Original strand, 56135747 - 56135869
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatag 243  Q
    ||||||||||||||||||| ||||||| ||||| | ||||||| |||||||| ||||||||||||||||||||| |||||||||||       ||||||     
T  56135747 taagggtgtgtttggattgagggtttaggaggggaagggaggggagggttcatttttattttttaaattacgaacaatgtaaaatgtttttttaaaataa 56135846  T
Q  244 attaagtgtttttgaagtattat 266  Q
    |||||||||||||||||||||||    
T  56135847 attaagtgtttttgaagtattat 56135869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 7977744 - 7977658
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    |||||||||||||||||||| ||||||||||||| |  |||||| |||||||| ||||||||||||||||||||| |||||||||||    
T  7977744 ttaagggtgtgtttggattgagggtttatgaggggaaaggaggggagggttcaattttattttttaaattacgaagaatgtaaaatg 7977658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 29994019 - 29993895
Alignment:
Q  142 attaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaat 241  Q
    |||||||||| |||| ||||  || |||| |||||||  |||||| |||||||||||||| ||||||||||||||| ||||||||| |       |||||    
T  29994019 attaagggtgagtttagattaaggatttaggagggaaatggaggggagggttcacttttactttttaaattacgaacaatgtaaaaagtttttttaaaat 29993920  T
Q  242 agattaagtgtttttgaagtattat 266  Q
    ||||||||| |||||||||||||||    
T  29993919 agattaagtatttttgaagtattat 29993895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 17182729 - 17182609
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagat 245  Q
    ||||||||||||||||| ||||||||||||| |  ||| || |||  | ||||||||||||||||||||||| || |||||||        |||||| ||    
T  17182729 agggtgtgtttggattgagggtttatgaggggaaaggaagggaggacttacttttattttttaaattacgaacaaggtaaaatatttttttaaaataaat 17182630  T
Q  246 taagtgtttttgaagtattat 266  Q
    |||||||||||||||||||||    
T  17182629 taagtgtttttgaagtattat 17182609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 22186714 - 22186839
Alignment:
Q  141 tattaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaa 240  Q
    |||| ||||||| ||||||||| ||||||| || || | ||||||| || ||||||||||| |||||||||||| || || ||||||||       ||||    
T  22186714 tatttagggtgtatttggattgagggtttaggaagggaagggagggcagagttcacttttaatttttaaattacaaacaacgtaaaatgtttttttaaaa 22186813  T
Q  241 tagattaagtgtttttgaagtattat 266  Q
    || || ||||||||||||||||||||    
T  22186814 taaataaagtgtttttgaagtattat 22186839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 49735466 - 49735537
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||||| ||||||| ||||| | ||||||| |||||||||||||  |||||||||||||    
T  49735466 taagggtgtgtttggattgagggtttaggaggggaagggaggggagggttcacttttcatttttaaattacg 49735537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 47846298 - 47846179
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg-nnnnnnnaaaatagatt 246  Q
    ||||||||||||||| ||||||| ||||  | |||| || |||||| ||||||||||||||||||| ||| |||||||| ||        |||||| |||    
T  47846298 ggtgtgtttggattgagggtttaagaggagaagggatgggagggtttacttttattttttaaattatgaacaatgtaaagtgttttttttaaaataaatt 47846199  T
Q  247 aagtgtttttgaagtattat 266  Q
    ||||||||||||||||||||    
T  47846198 aagtgtttttgaagtattat 47846179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 43961452 - 43961530
Alignment:
Q  188 agggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||| ||||||||||||||||||||| ||| |||||||||||       |||||| |||||||||||||||||||||||    
T  43961452 agggctcacttttattttttaaattatgaacaatgtaaaatgtttttttaaaataaattaagtgtttttgaagtattat 43961530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 54935063 - 54935139
Alignment:
Q  142 attaagggtgtgtttggattgtgggtttatgagggaatggga-gggaagggttcacttttattttttaaattacgaa 217  Q
    ||||||||||||||||||||| ||||||| ||||| | |||| ||| |||||| |||||| ||||||||||||||||    
T  54935063 attaagggtgtgtttggattgagggtttaggaggggaagggagggggagggtttacttttcttttttaaattacgaa 54935139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 34995099 - 34995171
Alignment:
Q  194 cacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||||||||||||||||||||||| ||||| |||||       |||||| |||||||||||||||||||||||    
T  34995099 cacttttattttttaaattacgaacaatgtgaaatgtttttctaaaataaattaagtgtttttgaagtattat 34995171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 54576573 - 54576490
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||  ||||||| ||| | | ||||| |||| ||||||||||| ||||||||||||||| || ||||||||    
T  54576573 agggtgtgtttggattaagggtttaagagaggaagggagagaagagttcacttttaatttttaaattacgaacaacgtaaaatg 54576490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 264
Target Start/End: Original strand, 55080581 - 55080697
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagatta 247  Q
    ||||||||||||||| ||||||| ||| | | | ||||  | |||||| ||||||||| ||||||||||| |||||||||||       ||||||  |||    
T  55080581 ggtgtgtttggattgagggtttaggagaggaagagaggagatggttcatttttattttgtaaattacgaacaatgtaaaatgttttttcaaaataagtta 55080680  T
Q  248 agtgtttttgaagtatt 264  Q
    |||||||||||||||||    
T  55080681 agtgtttttgaagtatt 55080697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 6938494 - 6938408
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    |||||||||||||||||| |  |||||||||||| |  |||||| |||||||||||||  ||||||||||||| ||| | |||||||    
T  6938494 ttaagggtgtgtttggatggaaggtttatgaggggaatggaggggagggttcacttttcatttttaaattacggatattataaaatg 6938408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 1968606 - 1968534
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||||||||| ||||||| ||||| | |||||||||| ||| | ||||  |||||||||||||    
T  1968606 ttaagggtgtgtttggattgagggtttaggaggggaagggagggaagagtttaattttcatttttaaattacg 1968534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 21695136 - 21695065
Alignment:
Q  142 attaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaatta 213  Q
    ||||||||||||||||||||| ||||||||||||| | || || | |||||| |||||| | ||||||||||    
T  21695136 attaagggtgtgtttggattgggggtttatgaggggaaggaagcggagggtttacttttctattttaaatta 21695065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 31348567 - 31348500
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaat 211  Q
    ||||||||||||||||||| | ||||| ||||| | ||||||| |||||| |||||| ||||||||||    
T  31348567 taagggtgtgtttggattgagagtttaggaggggaagggaggggagggtttacttttcttttttaaat 31348500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 44145773 - 44145844
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaa 217  Q
    ||||||||||||||||   |||||| ||||| | ||||||| |||  |||||||||||||||||||||||||    
T  44145773 agggtgtgtttggattcaaggtttaggaggggaagggaggggaggactcacttttattttttaaattacgaa 44145844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 46007942 - 46007879
Alignment:
Q  149 gtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaatt 212  Q
    |||||||||||||| ||||||| ||||| | ||||||| |||||| |||||| |||||||||||    
T  46007942 gtgtgtttggattgagggtttaggaggggaagggaggggagggtttacttttcttttttaaatt 46007879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 54320432 - 54320502
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattac 214  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||| ||||||   |||| |||||||||||||    
T  54320432 ttaagggtgtgtttggattgagggtttaggagggaaagggaggg-agggtttgattttcttttttaaattac 54320502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 37761462 - 37761536
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaa 217  Q
    |||||||||||||||||||| | ||||| ||||  |  |||||| || ||||||||||| |||||||||||||||    
T  37761462 ttaagggtgtgtttggattgagagtttaggaggagaaaggagggtagagttcacttttaatttttaaattacgaa 37761536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 32192849 - 32192890
Alignment:
Q  188 agggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  32192849 agggttcacttttattttttaaattatcaataatgtaaaatg 32192890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 54320678 - 54320609
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||| ||||||| ||||| | ||||||| ||||||   ||||| |||||||||||||    
T  54320678 agggtgtgtttggattgagggtttaggaggggaagggaggggagggtttgattttaatttttaaattacg 54320609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 4437633 - 4437549
Alignment:
Q  181 ggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||||| |||||||| |||||||||||||||||  || |||||||||||       |||||| || ||||||||||||||||||||    
T  4437633 ggaggggagggttcatttttattttttaaattaaaaacaatgtaaaatg-tttttaaaaataaatcaagtgtttttgaagtattat 4437549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 47846505 - 47846427
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagg-gaatgggagggaagggttcacttttattttttaaattacgaataatgtaaa 226  Q
    ||||||||||||||| ||||||| |||| ||| || | |||||| || ||||||||||||||||||| ||| ||||||||    
T  47846505 ggtgtgtttggattgagggtttaagaggagaagggaaaggaaggttt-acttttattttttaaattatgaacaatgtaaa 47846427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 31348341 - 31348390
Alignment:
Q  166 gtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||| | |||||||||||||| ||||||  |||||||||||||    
T  31348341 gtttatgaggggaagggagggaagggtttacttttcatttttaaattacg 31348390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 54935313 - 54935244
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||| | ||||||| ||||| | ||||||| |||||| | ||||  |||||||||||||    
T  54935313 agggtgtgtttggatggagggtttaggaggggaagggaggggagggtttatttttcatttttaaattacg 54935244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 5824952 - 5824984
Alignment:
Q  197 ttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||||||| |||||||||||    
T  5824952 ttttattttttaaattacgaaaaatgtaaaatg 5824984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 47433953 - 47433885
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattac 214  Q
    ||||||||||||| |||  |||||| ||||| | ||||| | |||||| |||||| |||||||||||||    
T  47433953 agggtgtgtttgggttgacggtttaggaggggaagggagaggagggtttacttttcttttttaaattac 47433885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 12022389 - 12022267
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatag 243  Q
    ||||||||||||||||||| ||||||| ||||| |  |||||| |||| ||||||||||||||||||||||| | |||||||||||       ||||||     
T  12022389 taagggtgtgtttggattgagggtttaggaggggaaaggaggggagggctcacttttattttttaaattacggacaatgtaaaatgtttttttaaaataa 12022290  T
Q  244 attaagtgtttttgaagtattat 266  Q
    |||||||||||||||||||||||    
T  12022289 attaagtgtttttgaagtattat 12022267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 9434547 - 9434461
Alignment:
Q  142 attaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||||||| ||||||| |||||||| | | ||||| ||||||||||||||||||||||| ||| |||||||||||    
T  9434547 attaagggtgtgtttggattgagggtttacgagggaatag-atggaagagttcacttttattttttaaattaggaacaatgtaaaatg 9434461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 8815388 - 8815302
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    |||||||||||||||||||| ||||||| |||||   ||||||| |||||||||||||| ||||||||||||||| | |||||||||    
T  8815388 ttaagggtgtgtttggattgagggtttaggagggggagggaggggagggttcacttttaatttttaaattacgaacactgtaaaatg 8815302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 7394706 - 7394624
Alignment:
Q  145 aagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaa 227  Q
    |||| ||||||||||||| ||||||| ||||| | ||||||| | |||||||||||||||||||||||||||| |||| ||||    
T  7394706 aaggatgtgtttggattgagggtttaggaggggaagggaggggatggttcacttttattttttaaattacgaacaatgcaaaa 7394624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 43732677 - 43732762
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||||| ||||||| ||||| | ||||| | |||  |||||||||||||||||||||| || |||||||||||    
T  43732677 taagggtgtgtttggattgagggtttaggaggggaagggagaggaggactcacttttattttttaaattactaacaatgtaaaatg 43732762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 20472933 - 20472816
Alignment:
Q  149 gtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaa 248  Q
    ||||||||||||||  ||||||  |||||| |||| ||||||  ||||||||||||||||||||||||| |||||||  ||       |||||| || ||    
T  20472933 gtgtgtttggattgaaggtttagaagggaaagggaaggaaggactcacttttattttttaaattacgaacaatgtaagttgttttttaaaaataaatcaa 20472834  T
Q  249 gtgtttttgaagtattat 266  Q
    ||||||||||||||||||    
T  20472833 gtgtttttgaagtattat 20472816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 1027094 - 1027023
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||||  ||||||| || || | ||||||||||||||||||||| ||||||||||||||    
T  1027094 taagggtgtgtttggattaagggtttaggaagggaagggagggaagggttcacttttcttttttaaattacg 1027023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 9933237 - 9933322
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaat 228  Q
    ||||||||||||||||||||  |||||| ||||  |  |||||||||  ||||||||||| |||||||||||||| ||||||||||    
T  9933237 ttaagggtgtgtttggattgaaggtttaggaggagaaaggagggaagaattcacttttatattttaaattacgaacaatgtaaaat 9933322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 43826333 - 43826450
Alignment:
Q  147 gggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagatt 246  Q
    |||||||||| ||||| || |||| ||||| |  |||||| || ||||| ||||||||| ||||||||||| |||||||||||       ||||||  ||    
T  43826333 gggtgtgtttagattgaggatttaggaggggaatggaggggagagttcatttttattttgtaaattacgaacaatgtaaaatgttttttcaaaataagtt 43826432  T
Q  247 aagtgtttttgaagtatt 264  Q
    ||||||||||||||||||    
T  43826433 aagtgtttttgaagtatt 43826450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 43732931 - 43732862
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||| | ||||||| ||||| | ||||||| |||||| |||||| ||||||||||||||    
T  43732931 agggtgtgtttggatggagggtttaggaggggaagggaggggagggtttacttttcttttttaaattacg 43732862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 8671987 - 8671918
Alignment:
Q  197 ttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||||||||||||||||| ||||||||||||||       |||||| ||||||| |||||||||||||||    
T  8671987 ttttattttttaaattacaaataatgtaaaatgtatttttaaaataaattaagtatttttgaagtattat 8671918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 40200548 - 40200481
Alignment:
Q  77 tgggcattcatgattccaatgacaacctttaaaaactcaaatctcttcttaattacctcaatgttattaag 147  Q
    ||||||| ||| |||||| ||||||||| ||||||||||||||||||||   | |||||||||||||||||    
T  40200548 tgggcatccataattccagtgacaacctctaaaaactcaaatctcttct---tgacctcaatgttattaag 40200481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 30365130 - 30365201
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaa 217  Q
    ||||||||||||||||| ||||||| ||||  |  |||||| || ||||||||||| |||||||||||||||    
T  30365130 agggtgtgtttggattgagggtttaggaggagaaaggaggggagagttcacttttaatttttaaattacgaa 30365201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 31543316 - 31543249
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaatta 213  Q
    ||||||||||| ||||| ||||||| ||||| | ||||||| |||||| |||||| ||||||||||||    
T  31543316 agggtgtgtttcgattgagggtttaggaggggaagggaggggagggtttacttttcttttttaaatta 31543249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 31543069 - 31543141
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||| ||||||||| | ||||||| ||||| | ||||||| |||||| ||||||  |||||||||||||    
T  31543069 ttaagggtatgtttggatggagggtttaagaggggaagggaggggagggtttacttttcatttttaaattacg 31543141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 39449351 - 39449424
Alignment:
Q  193 tcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    ||||||||||||||||||||||||| ||||| |||||       || ||| ||||| |||||||||||||||||    
T  39449351 tcacttttattttttaaattacgaacaatgtgaaatgtctttttaagataaattaactgtttttgaagtattat 39449424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 6453229 - 6453304
Alignment:
Q  193 tcacttttatttt-ttaaattacgaataatgtaaaat-gnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    ||||||||||||| |||||||||||||||||||||||         |||||| |||||||||||||||||||||||    
T  6453229 tcacttttatttttttaaattacgaataatgtaaaatattttttttaaaatatattaagtgtttttgaagtattat 6453304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 16024155 - 16024274
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg-nnnnnnnaaaatagatt 246  Q
    ||||||||||||||| ||||||| || || | ||||||| || | ||| ||||  ||||||||||||||| ||| |||||||         ||||| |||    
T  16024155 ggtgtgtttggattgagggtttaggaagggaagggaggggagagctcagtttttgtttttaaattacgaacaatataaaatgattttttttaaataaatt 16024254  T
Q  247 aagtgtttttgaagtattat 266  Q
    ||||||||||||||||||||    
T  16024255 aagtgtttttgaagtattat 16024274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 2248452 - 2248521
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||| | ||||| ||||| | ||||||| || ||||| |||  ||||||||||||||    
T  2248452 agggtgtgtttggattgagagtttaggaggggaagggaggggagagttcaatttccttttttaaattacg 2248521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 38021531 - 38021495
Alignment:
Q  192 ttcacttttattttttaaattacgaataatgtaaaat 228  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  38021531 ttcatttttattttttaaattaggaataatgtaaaat 38021495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 152 - 266
Target Start/End: Complemental strand, 10943852 - 10943738
Alignment:
Q  152 tgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtg 251  Q
    ||||||||||| ||||||||||||||| | ||||| |||||||||||||| ||||||||||||||| |||| ||||||       |||||| ||||||||    
T  10943852 tgtttggattgagggtttatgagggaaagagaggggagggttcacttttaatttttaaattacgaacaatgcaaaatgtttttttaaaataaattaagtg 10943753  T
Q  252 tttttgaagtattat 266  Q
    |||||||||||||||    
T  10943752 tttttgaagtattat 10943738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 143 - 266
Target Start/End: Complemental strand, 17474453 - 17474330
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaata 242  Q
    |||||| ||||||||||||| ||||| | ||||| | ||||||| || ||| ||||||||||||||||||||||||||||||||||        ||||||    
T  17474453 ttaaggatgtgtttggattgagggttgaggaggggaagggaggggagagttaacttttattttttaaattacgaataatgtaaaatattttttaaaaata 17474354  T
Q  243 gattaagtgtttttgaagtattat 266  Q
     |||||||||||||||||||||||    
T  17474353 aattaagtgtttttgaagtattat 17474330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 41414075 - 41414198
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaata 242  Q
    |||||||| ||||| ||||| ||||||| ||||||| ||||||| |||| ||||||||||||||||||||| ||| || ||||||||       ||||||    
T  41414075 ttaagggtatgtttagattgagggtttaggagggaaagggaggggagggctcacttttattttttaaattatgaacaaggtaaaatgtttttttaaaata 41414174  T
Q  243 gattaagtgtttttgaagtattat 266  Q
     || ||| ||||||||||||||||    
T  41414175 aatcaagcgtttttgaagtattat 41414198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 266
Target Start/End: Original strand, 24253719 - 24253842
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatggga-gggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaata 242  Q
    ||||||||||||||||||| ||||||| ||||||| |||| ||| || ||||||||||| ||||||||||| ||  ||||||||||        ||||||    
T  24253719 taagggtgtgtttggattgagggtttaggagggaaagggagggggagtgttcacttttaatttttaaattatgagcaatgtaaaataattttttaaaata 24253818  T
Q  243 gattaagtgtttttgaagtattat 266  Q
     |||||||||||||||||| ||||    
T  24253819 aattaagtgtttttgaagtgttat 24253842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 44412603 - 44412522
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    |||||||||||||||  ||||| |||||| | ||||||| |||  ||||||||||||||||||||||||| |||||||||||    
T  44412603 ggtgtgtttggattgatggtttgtgaggggaagggaggggaggactcacttttattttttaaattacgaacaatgtaaaatg 44412522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 34641027 - 34641112
Alignment:
Q  181 ggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||| |       |||||| |||||||||||||||||||||||    
T  34641027 ggaggggagggctcacttttattttttaaattacgaacaatgtaaaaggattttttaaaataaattaagtgtttttgaagtattat 34641112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 40858607 - 40858685
Alignment:
Q  188 agggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||| ||||||||||||||||||||||||| |||||||||||       |||||| ||| |||||||||||||||||||    
T  40858607 agggctcacttttattttttaaattacgaacaatgtaaaatgtttttttaaaataaatttagtgtttttgaagtattat 40858685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 266
Target Start/End: Complemental strand, 16884168 - 16884095
Alignment:
Q  193 tcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    ||||||||||||||||| ||||||| |||||||||||       |||||| |||||||||||||||||||||||    
T  16884168 tcacttttattttttaagttacgaacaatgtaaaatgtctttttaaaataaattaagtgtttttgaagtattat 16884095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 21090312 - 21090195
Alignment:
Q  149 gtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaa 248  Q
    ||||||||||||||  |||||| ||| | | ||||||  |||  ||||||||||||||||||||| ||| ||||||||||        |||||| |||||    
T  21090312 gtgtgtttggattgatggtttaggagaggaagggaggagaggactcacttttattttttaaattatgaacaatgtaaaatatttttttaaaataaattaa 21090213  T
Q  249 gtgtttttgaagtattat 266  Q
    ||||||||||||||||||    
T  21090212 gtgtttttgaagtattat 21090195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 26135844 - 26135917
Alignment:
Q  193 tcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    ||||||||||||||||||||| ||| |||||||||||       |||||| |||||||||||||||||||||||    
T  26135844 tcacttttattttttaaattatgaacaatgtaaaatgttttttaaaaataaattaagtgtttttgaagtattat 26135917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 266
Target Start/End: Original strand, 44412359 - 44412481
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatag 243  Q
    |||||||||||||| |||| ||||||| ||||| | | ||||| |||  ||| ||||  ||||||||||||||| |||||||||         ||||||     
T  44412359 taagggtgtgtttgaattgagggtttaggaggggaagagaggggaggactcattttttatttttaaattacgaacaatgtaaaacatttttttaaaataa 44412458  T
Q  244 attaagtgtttttgaagtattat 266  Q
    |||||||||||||||||||||||    
T  44412459 attaagtgtttttgaagtattat 44412481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 18086218 - 18086150
Alignment:
Q  158 gattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaa 226  Q
    ||||| ||||||||||||| ||||||||| | || ||||| |||||||||||||||| || ||||||||    
T  18086218 gattgagggtttatgaggggatgggagggtaaggctcactattattttttaaattactaacaatgtaaa 18086150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 46978462 - 46978547
Alignment:
Q  181 ggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||||| |||||||||||||| |||||||||||||||   |||||||||       |||||| ||||| |||||||||||||||||    
T  46978462 ggaggggagggttcacttttaatttttaaattacgaacggtgtaaaatgtttttttaaaataaattaaatgtttttgaagtattat 46978547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 48683659 - 48683732
Alignment:
Q  193 tcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||||||||||| |||||||||||| |||||||||||       |||||| |||||||||||||||| ||||||    
T  48683659 tcacttttatttcttaaattacgaacaatgtaaaatgtttttttaaaataaattaagtgtttttgaaatattat 48683732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 34641236 - 34641165
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||| | ||||||| ||||| | ||||||| |||| | |||||| ||||||||||||||    
T  34641236 taagggtgtgtttggatggagggtttaggaggggaagggaggggagggcttacttttcttttttaaattacg 34641165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 28582758 - 28582684
Alignment:
Q  141 tattaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||| |||||||||||||| || || |||| ||||| | ||||||| |||||| |||||| ||||||||||||||    
T  28582758 tatttagggtgtgtttggactgaggatttaggaggggaagggaggggagggtttacttttcttttttaaattacg 28582684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 42772046 - 42772112
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattac 214  Q
    |||||||||||||||  |||||| ||||| | ||||||| |||  ||||||||||||||||||||||    
T  42772046 ggtgtgtttggattgaaggtttaagaggggaagggaggggaggactcacttttattttttaaattac 42772112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 24253966 - 24253897
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||| | |||||||  |||| | ||||||||||| || |||||| ||||||||||||||    
T  24253966 agggtgtgtttggatggagggtttagaaggggaagggagggaaggatttacttttcttttttaaattacg 24253897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 41110568 - 41110496
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||||||||| |||||| |||||| | ||||| | | |||| ||||||  |||||||||||||    
T  41110568 ttaagggtgtgtttggattgagggtttgtgaggggaagggagaggaaggtttacttttcgtttttaaattacg 41110496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 24560215 - 24560286
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||||  ||||||| ||||| | ||||||| ||||||   |||| ||||||||||||||    
T  24560215 taagggtgtgtttggattaagggtttaggaggggaagggaggggagggtttgtttttcttttttaaattacg 24560286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 30200341 - 30200266
Alignment:
Q  144 taagggtgtgtttggattgtggg----tttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||||| |||    | || ||||| | |||||||||||||| |||||| ||||||||||||||    
T  30200341 taagggtgtgtttggattgagggagggtataggaggggaagggagggaagggtttacttttcttttttaaattacg 30200266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 8432461 - 8432383
Alignment:
Q  188 agggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||||||| ||||| |||||||| |||||| |||| ||||||       |||||  |||||||||||||||||||||||    
T  8432461 agggttcaattttaatttttaaactacgaacaatgaaaaatgtttttttaaaatgaattaagtgtttttgaagtattat 8432383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 27197846 - 27197814
Alignment:
Q  193 tcacttttattttttaaattacgaataatgtaa 225  Q
    ||||||||||||||||||||||||| |||||||    
T  27197846 tcacttttattttttaaattacgaacaatgtaa 27197814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 51861691 - 51861723
Alignment:
Q  197 ttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||| |||||||||||||||||    
T  51861691 ttttattttttaaatcacgaataatgtaaaatg 51861723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 266
Target Start/End: Original strand, 10204574 - 10204696
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatag 243  Q
    ||||||||||||||||| | ||||||| ||||| | ||||||  |||| |||||||||||||||||||||| || |||||||||||       ||||||     
T  10204574 taagggtgtgtttggatcgagggtttaggaggggaagggaggtgagggctcacttttattttttaaattaccaacaatgtaaaatgtctttttaaaataa 10204673  T
Q  244 attaagtgtttttgaagtattat 266  Q
    |||||||||||||||||||||||    
T  10204674 attaagtgtttttgaagtattat 10204696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 15986870 - 15986748
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatag 243  Q
    ||||||||||||||||||| ||||||| ||||| | || || | |||| ||||||||||||||||||||||||| |||||||||||       ||||||     
T  15986870 taagggtgtgtttggattgagggtttaggaggggaaggaagaggagggctcacttttattttttaaattacgaacaatgtaaaatgtctttttaaaataa 15986771  T
Q  244 attaagtgtttttgaagtattat 266  Q
    ||||||||||||| |||||||||    
T  15986770 attaagtgtttttaaagtattat 15986748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 34980812 - 34980930
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagatta 247  Q
    |||||||||||||||  |||||| ||||| | |||||||||||||||||||||| ||||||||||||||| || |||||||        |||||| ||||    
T  34980812 ggtgtgtttggattgaaggtttaggaggggaagggagggaagggttcacttttaatttttaaattacgaacaacgtaaaatatttttttaaaataaatta 34980911  T
Q  248 agtgtttttgaagtattat 266  Q
    |||||||||||||||||||    
T  34980912 agtgtttttgaagtattat 34980930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 5688448 - 5688533
Alignment:
Q  181 ggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||    
T  5688448 ggaggggagggttcacttttattttttaaattacgaacaatgtaaaatgtttttttaaaatagattaagtgtttttgaagtattat 5688533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 263
Target Start/End: Original strand, 21580947 - 21581064
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagat 245  Q
    ||||||| ||||||||| ||||||  ||| ||| ||||||| |||| ||||||||||||| ||||||||||| ||||||||||        |||||| ||    
T  21580947 agggtgtatttggattgggggttttggagagaaagggaggggaggggtcacttttattttctaaattacgaacaatgtaaaatatttttttaaaataaat 21581046  T
Q  246 taagtgtttttgaagtat 263  Q
    ||||||||||||||||||    
T  21581047 taagtgtttttgaagtat 21581064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 10043249 - 10043372
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaata 242  Q
    |||||||||| ||| |||||  |||||||||||| | ||||||| | |  ||||||||||||||||||||||||| ||||||||||        |||| |    
T  10043249 ttaagggtgtatttagattgatggtttatgaggggaagggaggggatgactcacttttattttttaaattacgaacaatgtaaaatattgttttaaaaga 10043348  T
Q  243 gattaagtgtttttgaagtattat 266  Q
     |||||||||||||||||||||||    
T  10043349 aattaagtgtttttgaagtattat 10043372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 8551660 - 8551542
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagatta 247  Q
    |||||||||||||||  |||||| ||||| | | |||||  ||  ||||||||||||||||||||||||  |||||||||||       |||||| ||||    
T  8551660 ggtgtgtttggattgaaggtttaggaggggaagagagggggggtctcacttttattttttaaattacgagcaatgtaaaatgtgttttaaaaataaatta 8551561  T
Q  248 agtgtttttgaagtattat 266  Q
    ||||||||| |||||||||    
T  8551560 agtgtttttaaagtattat 8551542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 262
Target Start/End: Complemental strand, 40305911 - 40305793
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatag 243  Q
    ||||||||||||||||||| ||||||| ||||  | ||||||| ||   ||| ||||||||||||||||||||  |||||||||||       ||||||     
T  40305911 taagggtgtgtttggattgagggtttaggaggagaagggaggggagaactcatttttattttttaaattacgaccaatgtaaaatgttttttcaaaataa 40305812  T
Q  244 attaagtgtttttgaagta 262  Q
    |||||| ||||||||||||    
T  40305811 attaagggtttttgaagta 40305793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 13634709 - 13634776
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaat 211  Q
    ||||||||||||||||||| ||||||| ||||| | ||||||| |||||| |||||| ||||||||||    
T  13634709 taagggtgtgtttggattgagggtttaggaggggaagggaggggagggtttacttttcttttttaaat 13634776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 14245086 - 14245157
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||||| ||||||| ||||| | ||||||| ||| || |||||| ||||||||||||||    
T  14245086 taagggtgtgtttggattgagggtttaggaggggaagggaggggaggatttacttttcttttttaaattacg 14245157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 260
Target Start/End: Complemental strand, 33744439 - 33744323
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatag 243  Q
    ||||||||| ||||||||| ||||||| |||   | ||||||| |||| |||||||||| |||||||||||||| |||  ||||||       ||||||     
T  33744439 taagggtgtatttggattgagggtttaggagatgaagggaggggagggctcacttttatattttaaattacgaacaattcaaaatgtttttttaaaataa 33744340  T
Q  244 attaagtgtttttgaag 260  Q
    |||||||||||||||||    
T  33744339 attaagtgtttttgaag 33744323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 26414891 - 26414962
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||||| ||||||| ||||  | ||||||| |||||| ||||||  |||||||||||||    
T  26414891 taagggtgtgtttggattgagggtttaggaggagaagggaggggagggtttacttttcgtttttaaattacg 26414962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 13634954 - 13634884
Alignment:
Q  147 gggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaa 217  Q
    |||||||||||||||| ||||||| ||||| | ||||||| |||| | ||||||  |||||||||||||||    
T  13634954 gggtgtgtttggattgagggtttaggaggggaagggaggggaggggttacttttcatttttaaattacgaa 13634884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 1658055 - 1657988
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||| | ||||||| ||||| | ||||||| |||||| ||||||  |||||||||||||    
T  1658055 ggtgtgtttggatggagggtttaggaggggaagggaggggagggtttacttttcatttttaaattacg 1657988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 2550592 - 2550533
Alignment:
Q  150 tgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaa 209  Q
    ||||||||||||| ||||||| ||||| | ||||||| |||||| |||||| ||||||||    
T  2550592 tgtgtttggattgagggtttaggaggggaagggaggggagggtttacttttcttttttaa 2550533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 7544134 - 7544205
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||||| ||||||| || || | ||||||| |||| | | |||| ||||||||||||||    
T  7544134 taagggtgtgtttggattgagggtttaggaagggaagggaggggagggctaaattttcttttttaaattacg 7544205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 10476272 - 10476202
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacga 216  Q
    ||||||||||||||| | ||||||| ||||| | ||||||| || ||| |||| || ||||||||||||||    
T  10476272 agggtgtgtttggatggagggtttaggaggggaagggaggggagtgtttacttataatttttaaattacga 10476202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 8502832 - 8502904
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatg-agggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||||||| |  |||||||| ||||||| ||| || |||||||||||||  |||||||||||||    
T  8502832 ttaagggtgtgtttggatggatggtttatgaagggaat-ggatgggagggttcacttttcatttttaaattacg 8502904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 14245290 - 14245221
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||| ||||||| ||||| | ||||||| ||||||   ||||  |||||||||||||    
T  14245290 agggtgtgtttggattgagggtttaggaggggaagggaggggagggtttgtttttcatttttaaattacg 14245221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 16938479 - 16938548
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||| ||||||| ||||| | ||||||| ||||||   |||| |||||||| |||||    
T  16938479 agggtgtgtttggattgagggtttaggaggggaagggaggggagggtttgtttttcttttttaagttacg 16938548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 6597984 - 6597944
Alignment:
Q  188 agggttcacttttattttttaaattacgaataatgtaaaat 228  Q
    |||| ||| ||||||||||||||||| ||||||||||||||    
T  6597984 agggctcatttttattttttaaattatgaataatgtaaaat 6597944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 10043489 - 10043413
Alignment:
Q  153 gtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||   ||||| |||| || ||||||| |||  |||||||| |||||||||||||||||| | |||||||    
T  10043489 gtttggattgattgtttaggaggaaaagggaggggaggactcacttttcttttttaaattacgaatattataaaatg 10043413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 11436936 - 11437008
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||| |||||||||||| ||||||| ||||| | ||||| | |||| | |||||  ||||||||||||||    
T  11436936 ttaagggcgtgtttggattgagggtttaggaggggaagggagaggagggcttactttccttttttaaattacg 11437008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 20147118 - 20147074
Alignment:
Q  142 attaagggtgtgtttggattgtgggtttatgagggaatgggaggg 186  Q
    ||||||||||||||||||||| ||||||| ||||| | |||||||    
T  20147118 attaagggtgtgtttggattgagggtttaggaggggaagggaggg 20147074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 23090992 - 23091115
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaata 242  Q
    ||||||||||||||||||||  |||||| ||||| | ||||||| |||| |||||||||| |||||||||||||| ||| |||||||       ||| ||    
T  23090992 ttaagggtgtgtttggattgaaggtttaggaggggaagggaggggagggctcacttttatcttttaaattacgaacaatctaaaatgtatttttaaacta 23091091  T
Q  243 gattaagtgtttttgaagtattat 266  Q
     |||||||||||||||||||||||    
T  23091092 aattaagtgtttttgaagtattat 23091115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 266
Target Start/End: Original strand, 15323225 - 15323345
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagat 245  Q
    ||||||||||||||||| ||||||| ||||| | ||||||  || | ||||||||||||||||||||||||| ||||||||||        |||||| ||    
T  15323225 agggtgtgtttggattgagggtttaggaggggaagggaggagagcgctcacttttattttttaaattacgaacaatgtaaaatatatttttaaaataaat 15323324  T
Q  246 taagtgtttttgaagtattat 266  Q
    ||||||||| ||| |||||||    
T  15323325 taagtgtttctgatgtattat 15323345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 15353364 - 15353447
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||| ||||||| ||||| | ||||||  || | ||||||||||||||||||||||||| |||||||||||    
T  15353364 agggtgtgtttggattgagggtttaggaggggaagggaggagagcgctcacttttattttttaaattacgaacaatgtaaaatg 15353447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 4097754 - 4097688
Alignment:
Q  149 gtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||| ||||||| ||||| | ||||||||||||||||||||| ||||||||||||||    
T  4097754 gtgtgtttggattgagggtttaagaggggaagggagggaagggttcacttttcttttttaaattacg 4097688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 10293250 - 10293332
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaat 228  Q
    ||||||||||||||||||||||||| ||  |||   ||||| |||| ||||||||||||||||||||||||| ||||||||||    
T  10293250 agggtgtgtttggattgtgggtttaggaaagaaaaagaggggagggctcacttttattttttaaattacgaacaatgtaaaat 10293332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 26318347 - 26318425
Alignment:
Q  188 agggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||||||| ||||||||||||||||||||| ||| |||||||       |||||| |||||||||||||||||||||||    
T  26318347 agggttcatttttattttttaaattacgaaaaatataaaatgtttttttaaaataaattaagtgtttttgaagtattat 26318425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 9051779 - 9051696
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaat 228  Q
    |||||||||||||||||||| ||||||| ||||| | ||||||| |  | ||||||||| ||||||||||||||| ||||||||||    
T  9051779 ttaagggtgtgtttggattgagggtttaagaggggaagggagggga-tgctcactttta-tttttaaattacgaacaatgtaaaat 9051696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 14515471 - 14515542
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||||| ||||||| ||||| | ||||||| ||||||   |||| ||||||||||||||    
T  14515471 taagggtgtgtttggattgagggtttaggaggggaagggaggggagggtttgtttttcttttttaaattacg 14515542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 30487302 - 30487373
Alignment:
Q  142 attaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaatta 213  Q
    ||||||||||||||||||| | ||||||| ||||| | ||||||| |||||||||||||  || ||||||||    
T  30487302 attaagggtgtgtttggatggagggtttaggaggggaagggaggggagggttcacttttcattgttaaatta 30487373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 9721134 - 9721207
Alignment:
Q  142 attaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||||||||||  |||||| ||||| | ||||||| |||||| | ||||  |||||||||||||    
T  9721134 attaagggtgtgtttggattgaaggtttaggaggggaagggaggggagggtttatttttcatttttaaattacg 9721207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 25468633 - 25468564
Alignment:
Q  148 ggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaa 217  Q
    ||||||||||||||   |||||| ||||| | ||||||||||| ||||||||||| |||| |||||||||    
T  25468633 ggtgtgtttggattaatggtttaagagggtaagggagggaaggattcacttttatatttttaattacgaa 25468564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 10818226 - 10818298
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||||||||| ||||||| ||||| | ||||||| |  ||| | |||| ||||||||||||||    
T  10818226 ttaagggtgtgtttggattgagggtttaggaggggaagggaggggattgtttatttttcttttttaaattacg 10818298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 15373774 - 15373738
Alignment:
Q  193 tcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||||||||||| |||||||||||    
T  15373774 tcacttttattttttaaattacgaacaatgtaaaatg 15373738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 34177097 - 34177061
Alignment:
Q  193 tcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||||||||||| |||||||||||    
T  34177097 tcacttttattttttaaattacgaacaatgtaaaatg 34177061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 9719027 - 9719100
Alignment:
Q  142 attaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||| |||||||||||||| ||||||| ||||| | ||||||| ||| || | ||||  |||||||||||||    
T  9719027 attaagcgtgtgtttggattgagggtttaggaggggaagggaggggaggatttatttttcatttttaaattacg 9719100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 9719273 - 9719208
Alignment:
Q  147 gggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaatt 212  Q
    |||||||||||||||| ||||||||||||| | | |||||  ||||| | |||| |||||||||||    
T  9719273 gggtgtgtttggattgagggtttatgaggggaagagaggggtgggtttaattttcttttttaaatt 9719208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 10818459 - 10818391
Alignment:
Q  147 gggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||||| | ||||| |||||   ||||||| |||||| ||||||  |||||||||||||    
T  10818459 gggtgtgtttggattgagagtttaggaggggtagggaggggagggtttacttttcatttttaaattacg 10818391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 266
Target Start/End: Complemental strand, 1085741 - 1085614
Alignment:
Q  139 gttattaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaa 238  Q
    |||||| ||||||||||||||| | ||||||| ||||| | ||||||  | |  |||||||||||||||||||||||||  ||||||||||       ||    
T  1085741 gttatttagggtgtgtttggatagagggtttaggaggggaagggaggagatgactcacttttattttttaaattacgaaccatgtaaaatgtttttttaa 1085642  T
Q  239 aatagattaagtgtttttgaagtattat 266  Q
    |||| |||||||||||||||||||||||    
T  1085641 aataaattaagtgtttttgaagtattat 1085614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 51303382 - 51303467
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||||| ||||||| ||||| | ||||||| |||| |||||||||||||||| ||||| || |||||||||||    
T  51303382 taagggtgtgtttggattgagggtttaggaggggaggggaggggagggctcacttttattttttatattaccaacaatgtaaaatg 51303467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 266
Target Start/End: Original strand, 33643268 - 33643388
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagat 245  Q
    ||||||||||| |||||  |||||| ||||| | |||| || | |  ||||||||||||||||||||||||| |||||||||||       |||||| ||    
T  33643268 agggtgtgtttagattgaaggtttaggaggggaagggaagggatgactcacttttattttttaaattacgaaaaatgtaaaatgtttttttaaaataaat 33643367  T
Q  246 taagtgtttttgaagtattat 266  Q
    |||||||||||||||||||||    
T  33643368 taagtgtttttgaagtattat 33643388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 35927810 - 35927894
Alignment:
Q  142 attaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaa 226  Q
    ||||||||||||||||||||| || |||| ||||| |  |||||| |||| |||| |||||||||||||||| ||| ||||||||    
T  35927810 attaagggtgtgtttggattgaggttttaggaggggaatggaggggagggctcacatttattttttaaattatgaacaatgtaaa 35927894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 40709532 - 40709416
Alignment:
Q  149 gtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaa 248  Q
    |||||||||||||| || |||| ||||| |  |||||| ||||| |||||||||||||||||||| ||| ||||||||| |       |||| | |||||    
T  40709532 gtgtgtttggattgaggatttaggaggggaacggaggggagggt-cacttttattttttaaattatgaacaatgtaaaaggttttttaaaaagaaattaa 40709434  T
Q  249 gtgtttttgaagtattat 266  Q
    ||||||||||||||||||    
T  40709433 gtgtttttgaagtattat 40709416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 525344 - 525261
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||| ||||||| || || | |||| ||||| ||||||||||| |||||||||||| || || ||||||||    
T  525344 agggtgtgtttggattgagggtttaggacgggaagggaaggaagagttcacttttaatttttaaattacaaacaacgtaaaatg 525261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 35349711 - 35349637
Alignment:
Q  141 tattaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||| ||||||||||||||||  ||||||||||||| | ||||||| |||||| ||||||  |||||||||||||    
T  35349711 tatttagggtgtgtttggattaagggtttatgaggggaagggaggggagggtttacttttcgtttttaaattacg 35349637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 12234007 - 12234079
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||||||||| ||||||| ||||| | ||||||| |||| | | |||| ||||||||||||||    
T  12234007 ttaagggtgtgtttggattgagggtttaggaggggaagggagggtagggcttaattttcttttttaaattacg 12234079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 2506576 - 2506659
Alignment:
Q  183 agggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||| |||||||| |||||| |||||||||||||  ||| |||||||       |||||| |||||||||||||||||||||||    
T  2506576 aggggagggttcatttttatcttttaaattacgaccaatataaaatgttttttcaaaataaattaagtgtttttgaagtattat 2506659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 2859169 - 2859107
Alignment:
Q  153 gtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||  |||||| ||||| | ||||||| |||||| |||||||||||||||||||||    
T  2859169 gtttggattgaaggtttaggaggggaagggaggggagggtttacttttattttttaaattacg 2859107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 40095180 - 40095110
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattac 214  Q
    ||||||||||||||||||| |||||||  ||| || |||| ||||||||| ||||||  ||||||||||||    
T  40095180 taagggtgtgtttggattgagggtttagaaggaaaagggaaggaagggtttacttttcgtttttaaattac 40095110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 41498401 - 41498471
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaatta 213  Q
    |||||||||||||||||||| ||||||| ||||| | | ||||| |||||| ||||||  |||||||||||    
T  41498401 ttaagggtgtgtttggattgagggtttaggaggggaagtgaggggagggtttacttttcgtttttaaatta 41498471  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 30010332 - 30010401
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||| ||||||| ||||| | ||||||| ||| || |||||| || |||||||||||    
T  30010332 agggtgtgtttggattgagggtttaggaggggaagggaggggaggatttacttttcttgtttaaattacg 30010401  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 38509894 - 38509963
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||| | ||||||| ||||| | ||||| | |||||||||||||  |||||||||||||    
T  38509894 agggtgtgtttggatagagggtttaggaggggaagggagaggagggttcacttttcatttttaaattacg 38509963  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 2858932 - 2859000
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattac 214  Q
    ||||||||||||||| | ||||||| ||||||| ||||||| |||||| ||||||  ||| ||||||||    
T  2858932 agggtgtgtttggatggagggtttaggagggaaagggaggggagggtttacttttcatttctaaattac 2859000  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 23536924 - 23536849
Alignment:
Q  154 tttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||| || |||||||||| | ||||||| |||| ||| ||||||||||||||| | ||  |||||||||||    
T  23536924 tttggattgaggatttatgaggggaagggaggggagggctcatttttattttttaaataatgatcaatgtaaaatg 23536849  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 35513037 - 35512974
Alignment:
Q  150 tgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaatta 213  Q
    ||||||||||| | ||||||| ||||| | ||||||| |||| | |||||||||||||||||||    
T  35513037 tgtgtttggatggagggtttaggaggggaagggaggggagggcttacttttattttttaaatta 35512974  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 25268313 - 25268384
Alignment:
Q  195 acttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||||||| |||||||||  ||| |||||||||||       |||||| |||||||||||||||||||||||    
T  25268313 acttttatattttaaattttgaacaatgtaaaatgtatttttaaaataaattaagtgtttttgaagtattat 25268384  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 40094933 - 40095002
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||| | ||||||| ||||| | || |||| |||||| ||||||  |||||||||||||    
T  40094933 agggtgtgtttggatggagggtttaggaggggaaggaaggggagggtttacttttcatttttaaattacg 40095002  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 20607464 - 20607400
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttatttttt 207  Q
    |||||||||||||||||| | ||||||| ||||| | ||||||| |||||| ||| || ||||||    
T  20607464 ttaagggtgtgtttggatggagggtttaggaggggaagggaggggagggtttactattttttttt 20607400  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 52707692 - 52707765
Alignment:
Q  193 tcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    |||||||||||||||||| ||| || |||||||||||       |||||| |||| || |||||||||||||||    
T  52707692 tcacttttattttttaaactacaaacaatgtaaaatgttttttaaaaataaattatgtatttttgaagtattat 52707765  T

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Target: scaffold0026 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 1645 - 1559
Alignment:
Q  143 ttaagggtgtgtttggattgtgggtttatgag-ggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||| |||| ||||||| ||| ||||||| |||| |||| ||||||||||||||||||||||||| |||||||||||    
T  1645 ttaagggtgtgtttgaattgagggtttaggagaggaatgg-aggggagggctcacttttattttttaaattacgaacaatgtaaaatg 1559  T

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Target: scaffold0026; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 1175 - 1241
Alignment:
Q  149 gtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    |||||||||||||| ||||||| ||||| | | ||||| || ||| |||||| ||||||||||||||    
T  1175 gtgtgtttggattgagggtttaggaggggaagagaggggagagtttacttttcttttttaaattacg 1241  T

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Target: scaffold0119 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 30713 - 30798
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    |||||||| |||||||||| || |||| ||||  | ||||||| |||| ||||||||||||||||||||||||| |||||||||||    
T  30713 taagggtgcgtttggattgaggatttaggaggacaagggaggggagggctcacttttattttttaaattacgaacaatgtaaaatg 30798  T

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Target: scaffold0119; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 266
Target Start/End: Original strand, 37381 - 37503
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatag 243  Q
    |||||||| ||||| |||| || |||| ||||| | || |||| |||| ||||||||||||||||||||||||| |||||||||||       ||||||     
T  37381 taagggtgcgtttgaattgaggatttaggagggcaaggaaggggagggctcacttttattttttaaattacgaacaatgtaaaatgtttttttaaaataa 37480  T
Q  244 attaagtgtttttgaagtattat 266  Q
    || ||||||||||||||| ||||    
T  37481 atcaagtgtttttgaagtgttat 37503  T

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Target: scaffold0067 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 39438 - 39365
Alignment:
Q  142 attaagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||||||||||||| |||||||  |||||| ||||||| |||||| |||||| ||||||||||||||    
T  39438 attaagggtgtgtttggattgagggtttagaagggaaagggaggggagggtttacttttcttttttaaattacg 39365  T

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Target: scaffold0095 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 8194 - 8267
Alignment:
Q  193 tcacttttattttttaaattacgaataatgtaaaatgnnnnnnnaaaatagattaagtgtttttgaagtattat 266  Q
    ||||||||||||||||||||||||| ||||| |||||       || ||| ||||| |||||||||||||||||    
T  8194 tcacttttattttttaaattacgaacaatgtgaaatgtctttttaagataaattaactgtttttgaagtattat 8267  T

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Target: scaffold0240 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 17784 - 17701
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacgaataatgtaaaatg 229  Q
    ||||||||||||||||| | ||||||| ||| | | |||||||  ||||| |||||| ||||||||||||| |||| | |||||||    
T  17784 taagggtgtgtttggatggagggtttaggagtggaagggaggg--gggtttacttttcttttttaaattacaaatattataaaatg 17701  T

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Target: scaffold0262 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 16294 - 16363
Alignment:
Q  144 taagggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaatta 213  Q
    ||||||| ||||||||| | ||||||| |||||||  |||||| |||||| ||||||  |||||||||||    
T  16294 taagggtttgtttggatggagggtttaggagggaaaaggaggggagggtttacttttcatttttaaatta 16363  T

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Target: scaffold0198 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 3150 - 3215
Alignment:
Q  149 gtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattac 214  Q
    |||||||||||||| | ||||| ||||| | ||||||| || ||| |||||| |||||||||||||    
T  3150 gtgtgtttggattgagagtttaggaggggaagggaggggagagtttacttttcttttttaaattac 3215  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 242456 - 242391
Alignment:
Q  150 tgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattacg 215  Q
    ||||||||||| |  ||||||| |||| | ||||||| |||||| |||||| ||||||||||||||    
T  242456 tgtgtttggatggatggtttataaggggaagggaggggagggtttacttttcttttttaaattacg 242391  T

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Target: scaffold0096 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 6584 - 6652
Alignment:
Q  146 agggtgtgtttggattgtgggtttatgagggaatgggagggaagggttcacttttattttttaaattac 214  Q
    |||||||||||||||||  | |||| ||||  | ||||||| |||||| |||||| |||||||||||||    
T  6584 agggtgtgtttggattgaagttttaggaggagaagggaggggagggtttacttttcttttttaaattac 6652  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 184636 - 184668
Alignment:
Q  181 ggagggaagggttcacttttattttttaaatta 213  Q
    |||||| ||||||||||||||||||||||||||    
T  184636 ggaggggagggttcacttttattttttaaatta 184668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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