View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8439_low_15 (Length: 250)

Name: NF8439_low_15
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8439_low_15
NF8439_low_15
[»] chr2 (12 HSPs)
chr2 (17-250)||(2380777-2381010)
chr2 (12-206)||(11031543-11031737)
chr2 (13-135)||(3044166-3044288)
chr2 (18-212)||(7901121-7901309)
chr2 (19-208)||(6764183-6764372)
chr2 (19-208)||(12410550-12410739)
chr2 (19-208)||(12422610-12422799)
chr2 (19-208)||(37647728-37647917)
chr2 (111-217)||(29739857-29739963)
chr2 (12-122)||(34394632-34394742)
chr2 (12-193)||(27271426-27271598)
chr2 (13-69)||(29739969-29740025)
[»] chr8 (11 HSPs)
chr8 (13-217)||(9932248-9932452)
chr8 (13-196)||(25582733-25582916)
chr8 (13-217)||(13780996-13781199)
chr8 (12-206)||(4034442-4034636)
chr8 (12-206)||(13089928-13090122)
chr8 (12-196)||(45540090-45540274)
chr8 (19-208)||(8444408-8444597)
chr8 (22-208)||(24503817-24504003)
chr8 (12-67)||(10230256-10230311)
chr8 (37-203)||(33574275-33574441)
chr8 (37-109)||(45103902-45103974)
[»] chr1 (16 HSPs)
chr1 (13-217)||(20505389-20505593)
chr1 (13-217)||(26676643-26676847)
chr1 (13-217)||(33676648-33676852)
chr1 (13-215)||(46731815-46732017)
chr1 (13-186)||(28756630-28756803)
chr1 (13-215)||(31911700-31911902)
chr1 (12-206)||(34549116-34549310)
chr1 (23-196)||(19228051-19228224)
chr1 (12-196)||(33936202-33936386)
chr1 (26-215)||(27007552-27007741)
chr1 (19-196)||(4532235-4532412)
chr1 (19-130)||(51534626-51534737)
chr1 (16-115)||(52022615-52022714)
chr1 (22-214)||(15759708-15759900)
chr1 (39-125)||(42966868-42966954)
chr1 (74-107)||(36016714-36016747)
[»] chr3 (5 HSPs)
chr3 (13-215)||(10436583-10436785)
chr3 (13-217)||(20406123-20406327)
chr3 (18-216)||(15029826-15030024)
chr3 (79-194)||(53459125-53459240)
chr3 (22-127)||(20692239-20692344)
[»] chr5 (7 HSPs)
chr5 (13-214)||(26369087-26369288)
chr5 (18-214)||(22580548-22580747)
chr5 (19-208)||(19021153-19021342)
chr5 (19-208)||(22639322-22639511)
chr5 (22-215)||(40973432-40973625)
chr5 (22-127)||(25982339-25982444)
chr5 (12-70)||(6536978-6537036)
[»] chr4 (15 HSPs)
chr4 (13-217)||(47590607-47590811)
chr4 (18-217)||(48640478-48640677)
chr4 (18-216)||(56024790-56024988)
chr4 (13-215)||(40850560-40850762)
chr4 (12-206)||(37870799-37870993)
chr4 (19-208)||(36651889-36652078)
chr4 (19-208)||(43499060-43499249)
chr4 (12-208)||(9896647-9896843)
chr4 (19-208)||(42718333-42718522)
chr4 (12-196)||(39059862-39060046)
chr4 (22-208)||(7743335-7743521)
chr4 (101-188)||(23106851-23106938)
chr4 (22-215)||(40345944-40346137)
chr4 (22-215)||(30598391-30598584)
chr4 (79-215)||(50771555-50771691)
[»] chr7 (14 HSPs)
chr7 (13-217)||(40858172-40858376)
chr7 (12-206)||(40871455-40871649)
chr7 (12-206)||(17194033-17194226)
chr7 (19-208)||(1031987-1032176)
chr7 (12-152)||(12623057-12623197)
chr7 (41-196)||(9942772-9942927)
chr7 (47-124)||(8123965-8124042)
chr7 (22-215)||(32575219-32575412)
chr7 (22-203)||(19323986-19324167)
chr7 (23-215)||(18299607-18299799)
chr7 (22-215)||(38141989-38142182)
chr7 (22-214)||(15669442-15669634)
chr7 (22-189)||(29126016-29126183)
chr7 (55-127)||(41767942-41768014)
[»] chr6 (9 HSPs)
chr6 (13-213)||(6029078-6029278)
chr6 (12-217)||(18972761-18972967)
chr6 (12-217)||(24393658-24393863)
chr6 (12-206)||(12912401-12912595)
chr6 (22-215)||(7093672-7093865)
chr6 (76-189)||(30987217-30987330)
chr6 (37-127)||(8753092-8753182)
chr6 (62-118)||(12250923-12250979)
chr6 (143-203)||(32737327-32737387)
[»] scaffold0074 (1 HSPs)
scaffold0074 (18-217)||(23541-23741)
[»] scaffold0041 (1 HSPs)
scaffold0041 (12-206)||(94633-94827)
[»] scaffold0300 (1 HSPs)
scaffold0300 (19-208)||(9340-9529)
[»] scaffold0432 (1 HSPs)
scaffold0432 (22-215)||(8850-9043)
[»] scaffold0020 (1 HSPs)
scaffold0020 (13-68)||(124342-124397)
[»] scaffold0037 (1 HSPs)
scaffold0037 (12-69)||(867-924)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 2380777 - 2381010
Alignment:
Q  17 tcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatc 116  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||| |||||||||||    
T  2380777 tcaagcaaggtaaaggatttaaacaccaagaatggtaggagaaaacgaaactaggacgatttgctttcagccaccagtaaaattgaagtttaactttatc 2380876  T
Q  117 tagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagcg 216  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2380877 tagcaattgattaattgaagcttctgtttggtgaaaagtctgagcattcctttcaagccaaatcacccacacacaagataaccatataaaatgaaaagcg 2380976  T
Q  217 gttgttgtttctcttaggatgtgtttggatagag 250  Q
     |||||||||||||||||||||||||||||||||    
T  2380977 attgttgtttctcttaggatgtgtttggatagag 2381010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 11031737 - 11031543
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||| || || ||||||| |||||||||||||||||||||||||| |||    
T  11031737 tattcccaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaattaggacgatttgccttcagccaccagtaagattgaagcttgact 11031638  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataag 206  Q
    |||||||||||||||||||  ||||||||| ||||||||||   | |||||||||||||||| ||||||||||||||||| |||| ||| |||||    
T  11031637 ttatctagcaattgattaaaagaagcttctttttggtgaaagatccgagcattcctttcaagtcaaatcacccacacacatgatagccaaataag 11031543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 3044288 - 3044166
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  3044288 attctcaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactt 3044189  T
Q  113 tatctagcaattgattaatcgaa 135  Q
    |||||||||||||||||||||||    
T  3044188 tatctagcaattgattaatcgaa 3044166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 7901121 - 7901309
Alignment:
Q  18 caagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaa----gcttaacttt 113  Q
    |||||||||||||  ||||||||||||  |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||    ||||||||||    
T  7901121 caagcaaggtaaagaatttaaccaccataaatgataggagaaaacaaaactaggacgatttgctttcagccaccagtaagattgaagcttgcttaacttt 7901220  T
Q  114 atctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    ||||| |||||||||||| ||||||||||||||||||||| || |||||||||||          ||| ||||||||||||||||||||||||||||||    
T  7901221 atctaacaattgattaattgaagcttctgtttggtgaaaaacccgagcattcctt----------tcatccacacacaagataaccatataagatgaaa 7901309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 6764372 - 6764183
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    |||||||||||| | || |||||||| |||||||||||||||||||||||| |  | || ||||||||||||||||| ||||||||||||||||||||||    
T  6764372 aagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattgaagcttaactttatcta 6764273  T
Q  119 gcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
     |||||||||||  ||||||||| ||||||||||     ||||||| ||||||||||| ||||||||||||||||||| ||| |||||||    
T  6764272 acaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataagat 6764183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 12410739 - 12410550
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    |||||||||||| | || |||||||| |||||||||||||||||||||||| |  | || ||||||||||||||||| ||||| ||||||||||||||||    
T  12410739 aagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatcta 12410640  T
Q  119 gcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
     |||||||||||  ||||||||| ||||||||||     ||||||| ||||||||||| ||||||||||||||||||| ||| |||||||    
T  12410639 acaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccatatcacccacacacaagatagccaaataagat 12410550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 12422799 - 12422610
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    |||||||||||| | || |||||||| |||||||||||||||||||||||| |  | || ||||||||||||||||| ||||| ||||||||||||||||    
T  12422799 aagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatcta 12422700  T
Q  119 gcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
     |||||||||||  ||||||||| ||||||||||     ||||||| ||||||||||| ||||||||||||||||||| ||| |||||||    
T  12422699 acaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccatatcacccacacacaagatagccaaataagat 12422610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 37647917 - 37647728
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    |||||||||||| | |  |||||||| |||||||||||||||||||||||| |  | || ||||||||||||||||| ||||| ||||||||||||||||    
T  37647917 aagcaaggtaaagggtccaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatcta 37647818  T
Q  119 gcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
     |||||||||||  ||||||||| ||||||||||     ||||||| ||||||||||| |||||||||||||| |||| ||| |||||||    
T  37647817 acaattgattaaaagaagcttctttttggtgaaatatacgagcatttctttcaagccagatcacccacacacaggatagccaaataagat 37647728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 29739963 - 29739857
Alignment:
Q  111 tttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatga 210  Q
    |||||||  |||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  29739963 tttatctgtcaattgattaatcgaagcttttgtttggtgaaaaacccgagcattcctttcaagccaaatcactcacacacaaaataaccatataagatga 29739864  T
Q  211 aaagcgg 217  Q
    |||||||    
T  29739863 aaagcgg 29739857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 34394632 - 34394742
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    |||| ||||||||||||||||||| ||||  || |||||||||||||||||||||||| || ||||||| |||| |||  ||||||||||||||||| ||    
T  34394632 tattttcaagcaaggtaaaagattcaaccttcacgaatggtaggagaaaacaaaactaggacgatttgccttcaaccaatagtaagattgaagcttatct 34394731  T
Q  112 ttatctagcaa 122  Q
    |||||||||||    
T  34394732 ttatctagcaa 34394742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 27271598 - 27271426
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||| ||||||||||||| | || |||||||| ||| |||||||||||||||||||| || | || | |||||||||||||||  |||| |||||        
T  27271598 tattcccaagcaaggtaaagggttcaaccaccatgaaaggtaggagaaaacaaaactaggacggttcgttttcagccaccagtataattggagctt---- 27271503  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaag 193  Q
         || |||||||||||  ||||||||| ||||||||||     ||||||| |||| |||||||||||||||||||||||    
T  27271502 -----taacaattgattaaaagaagcttctttttggtgaaatattcgagcatttcttttaagccaaatcacccacacacaag 27271426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 29740025 - 29739969
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaacta 69  Q
    |||| |||||||  |||||||||||||||||||||||| ||||||||||||||||||    
T  29740025 attcccaagcaatttaaaagatttaaccaccaagaatgataggagaaaacaaaacta 29739969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 9932248 - 9932452
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  9932248 attcccaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactt 9932347  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9932348 tatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 9932447  T
Q  213 agcgg 217  Q
    |||||    
T  9932448 agcgg 9932452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 25582733 - 25582916
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  25582733 attcccaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactt 25582832  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagata 196  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  25582833 tatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagata 25582916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 13780996 - 13781199
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||    
T  13780996 attcccaagtaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaattaggacgatttgctttcagccac-agtaagattgaagcttaactt 13781094  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    ||| || ||||| | |||||||||||||| ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13781095 tatttaacaattaagtaatcgaagcttctatttggtgaaaaacccgagcattcctttcaagccaaatcatccacacacaagataaccatataagatgaaa 13781194  T
Q  213 agcgg 217  Q
    |||||    
T  13781195 agcgg 13781199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 4034442 - 4034636
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||    
T  4034442 tattcccaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttgctttcagccaccagtaagattgaagcttgact 4034541  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataag 206  Q
    ||||| |||||||||||||  ||||||||| ||||||||||   |||| ||||||||||||||||||||||||||||||| |||| ||| |||||    
T  4034542 ttatccagcaattgattaaaagaagcttctttttggtgaaagatctgatcattcctttcaagccaaatcacccacacacatgatagccaaataag 4034636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 13089928 - 13090122
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||| ||||||||||||| |||| ||||||||  ||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||| |||    
T  13089928 tattcccaagcaaggtaaaggattcaaccaccataaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgact 13090027  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataag 206  Q
    |||||||||||||||||||  ||||||||| ||||||||||   | || ||||||||||||||||||||||||||||||| |||| ||| |||||    
T  13090028 ttatctagcaattgattaaaagaagcttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacacatgatagccaaataag 13090122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 45540274 - 45540090
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||| ||||||||||||| | || |||||||| ||||||||||||||||||||||||||  | || ||||||||||||||||| |||||||| ||||||    
T  45540274 tattcccaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaaggcggttcgctttcagccaccagtatgattgaagtttaact 45540175  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagata 196  Q
    ||||||| |||||||||||  ||||||||| |||||||||| |   ||||||||||||||||| | |||||||||||||||||||    
T  45540174 ttatctaacaattgattaaaagaagcttctttttggtgaaatgttcgagcattcctttcaagctagatcacccacacacaagata 45540090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 8444408 - 8444597
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    ||||||||||||   || ||| |||| |||||||| ||||||||||||||| |  |||| ||||||||||||||||| ||||| ||||||||||||||||    
T  8444408 aagcaaggtaaagagttcaacaaccatgaatggtaagagaaaacaaaactaggtcgattcgctttcagccaccagtatgattggagcttaactttatcta 8444507  T
Q  119 gcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
     |||||||||||  ||||||||| ||||||||||     |||||||||||||||| || ||||||||||||||||||| ||| |||||||    
T  8444508 acaattgattaaaagaagcttctttttggtgaaatatgcgagcattcctttcaaggcagatcacccacacacaagatagccaaataagat 8444597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 24504003 - 24503817
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||| | || | |||||| |||||||||||||||||||||||| |  | || ||||||| ||||||||| ||||| |||||||||||||||| ||    
T  24504003 caaggtaaagggttcagccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcaaccaccagtatgattggagcttaactttatctaaca 24503904  T
Q  122 attgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
    |||||||||  ||||||||| ||||||||||     || |||| |||||||| |||||||||||||||||||||| ||| |||||||    
T  24503903 attgattaaaagaagcttctttttggtgaaatatgcgaacattactttcaagacaaatcacccacacacaagatagccaaataagat 24503817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 10230256 - 10230311
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaac 67  Q
    |||||||| |||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  10230256 tattctcaggcaaagtaaatgatttaaccaccatgaatggtaggagaaaacaaaac 10230311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 203
Target Start/End: Original strand, 33574275 - 33574441
Alignment:
Q  37 aaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaag 136  Q
    |||||| || |||| || ||||||||||| ||| || |||| ||||||| ||||||| |||||||||| |||| ||| || || ||||||| ||  | ||    
T  33574275 aaccacaaaaaatgataagagaaaacaaagctaggacgattcgctttcaaccaccagaaagattgaagtttaattttgtcgagtaattgatcaagagtag 33574374  T
Q  137 -cttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatat 203  Q
     ||||| |||||| ||| |||||||| || ||||| | ||| |||||||| | |||||| | ||||||    
T  33574375 ccttct-tttggttaaaggcctgagcgtttctttcgatccagatcacccaaatacaagaaagccatat 33574441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 45103902 - 45103974
Alignment:
Q  37 aaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaa 109  Q
    ||||||||| |||| || ||||||||||| ||| || |||| ||||||| ||| ||| |||||||||| ||||    
T  45103902 aaccaccaaaaatgataagagaaaacaaagctatgacgattcgctttcaaccatcagaaagattgaagtttaa 45103974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 20505593 - 20505389
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  20505593 attcccaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactt 20505494  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20505493 tatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 20505394  T
Q  213 agcgg 217  Q
    |||||    
T  20505393 agcgg 20505389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 26676847 - 26676643
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  26676847 attcccaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactt 26676748  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26676747 tatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatattagatgaaa 26676648  T
Q  213 agcgg 217  Q
    |||||    
T  26676647 agcgg 26676643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 33676648 - 33676852
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||    
T  33676648 attcccaaacaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccactagtaagattgaagcttaactt 33676747  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33676748 tatctagcaattgattaatcgaaacttctgtttggtgaaaaacctgagcattcctttcaagccaaatcactcacacacaagataaccatataagatgaaa 33676847  T
Q  213 agcgg 217  Q
    |||||    
T  33676848 agcgg 33676852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 46732017 - 46731815
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||| || || ||||||||||||| |||||| ||||||||||||||||||    
T  46732017 attctcaagcaaggtaaaggatttaaccaccaaaaatggtaggagaaaacaaaattaggacgatttgctttcagtcaccagcaagattgaagcttaactt 46731918  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46731917 tatctagcaattgattaatcgaagcttttgtttggtgaaaaacccgattattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 46731818  T
Q  213 agc 215  Q
    |||    
T  46731817 agc 46731815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 28756630 - 28756803
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28756630 attcccaaacaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggatgatttgctttcagccaccagtaagattgaagcttaactt 28756729  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccac 186  Q
    |||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  28756730 tatctaacaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccac 28756803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 31911700 - 31911902
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| ||||||||||||| || | |||||||| |||||||||||||||||||||||| || ||||  ||||||||||| |||||||||||||||||||||    
T  31911700 attcccaagcaaggtaaatgactcaaccaccacgaatggtaggagaaaacaaaactatgacgattcactttcagccactagtaagattgaagcttaactt 31911799  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    |||||||||||||||||| |||| ||||| ||||||||||   |||||||||||||||||| ||||||||||| |||||||||| ||| ||||||| |||    
T  31911800 tatctagcaattgattaaacgaaacttctttttggtgaaagatctgagcattcctttcaagtcaaatcacccatacacaagatagccaaataagattaaa 31911899  T
Q  213 agc 215  Q
    |||    
T  31911900 agc 31911902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 34549310 - 34549116
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||| |||    
T  34549310 tattcccaagcaaggtaaaggattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgact 34549211  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaa-agcctgagcattcctttcaagccaaatcacccacacacaagataaccatataag 206  Q
    |||||||||||||||||||  ||||||||| |||||| ||| | ||| | |||||||||||||||| |||||||||||||| |||| ||| |||||    
T  34549210 ttatctagcaattgattaaaagaagcttctttttggttaaagatcct-atcattcctttcaagccatatcacccacacacatgatagccaaataag 34549116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 19228051 - 19228224
Alignment:
Q  23 aaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagcaa 122  Q
    |||||||| |||| |||||||| |||||||||||||||||||||||| || ||||| | ||||||||||  |||||||||||||| ||||||||||||||    
T  19228051 aaggtaaaggattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttaccttcagccaccgataagattgaagcttgactttatctagcaa 19228150  T
Q  123 ttgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagata 196  Q
    ||||||||  ||||||||| ||||||||||   | |||||||||||||||||||||||||||||||||| ||||    
T  19228151 ttgattaaaagaagcttctttttggtgaaagatccgagcattcctttcaagccaaatcacccacacacatgata 19228224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 33936386 - 33936202
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||| ||| ||||||||| ||||  ||||||| |||||||| ||||||||||||||| || |||| ||||||||  | |||||||||||||||||||||    
T  33936386 tattcccaatcaaggtaaaggattcgaccaccacgaatggtaagagaaaacaaaactatgacgattcgctttcagttatcagtaagattgaagcttaact 33936287  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagata 196  Q
    |||| |||||||||||||| |||| ||||  ||||||||||   | |||||||||||||||||||||||||||||||||||||||    
T  33936286 ttatttagcaattgattaaacgaatcttcattttggtgaaagatccgagcattcctttcaagccaaatcacccacacacaagata 33936202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 215
Target Start/End: Original strand, 27007552 - 27007741
Alignment:
Q  26 gtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagcaattg 125  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||  |  ||| ||||||||| |||| || |||||||  |||||| |||||||||||||    
T  27007552 gtaaaggattcaaccaccacgaatggtaggagaaaacaaaactagaaaaattcgctttcagctaccaatatgattgaaatttaactctatctagcaattg 27007651  T
Q  126 attaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagc 215  Q
    ||||| ||||| |||| ||||||||||  || || ||||| ||||||||||||||||||||||||||||||  |||||||| | ||||||    
T  27007652 attaaacgaagattctttttggtgaaagacccgaacattcatttcaagccaaatcacccacacacaagatagtcatataagtttaaaagc 27007741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 4532235 - 4532412
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    ||||||||| || | || |||||||| |||||||||||||||||||||||| |  | || ||||||||||||||||| |||||  |||||||||||||||    
T  4532235 aagcaaggtgaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggtgcttaactttatcta 4532334  T
Q  119 gcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagata 196  Q
     |||||||||||  |||| |||| ||||||||||     |||||||||||||||| || |||||||||||||||||||    
T  4532335 acaattgattaaaagaagtttctttttggtgaaatatgcgagcattcctttcaagtcagatcacccacacacaagata 4532412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 51534626 - 51534737
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    |||||||||||| | || || ||||| ||||||||||||||| |||||||| |  | || |||||||||||||| || ||||| ||||||||||||||||    
T  51534626 aagcaaggtaaagggttcaatcaccatgaatggtaggagaaaccaaaactaggtcggttcgctttcagccaccaatatgattggagcttaactttatcta 51534725  T
Q  119 gcaattgattaa 130  Q
     |||||||||||    
T  51534726 acaattgattaa 51534737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 52022714 - 52022615
Alignment:
Q  16 ctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttat 115  Q
    |||||| |||||||| |||| |||||||| ||||| |||||||||||||||||| ||  ||| |||||| |||  |||||||||||||||||||||||||    
T  52022714 ctcaagtaaggtaaaggattcaaccaccatgaatgataggagaaaacaaaactaggacaattcgctttcggccgtcagtaagattgaagcttaactttat 52022615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 15759900 - 15759708
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||| | || ||||| ||  |||||||||| ||| ||||  || || | || ||||||||||||||||| |||||||| |||| ||||||||| |    
T  15759900 caaggtaaagggttcaaccatcacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagta 15759801  T
Q  122 attgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaag 214  Q
    ||||||| | |||  | ||| |||| |||||  || |||  || ||||| | |||||||||| |||||||||| | |||||| |||| |||||    
T  15759800 attgattgaacgagacctctttttgatgaaagacccgagtgtttctttctatccaaatcacctacacacaagaaagccatatgagattaaaag 15759708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 42966868 - 42966954
Alignment:
Q  39 ccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagcaattg 125  Q
    ||||||| |||| || || ||||||||| |  ||||||||||||| |||||  | |||||||||||||||| |||||| || |||||    
T  42966868 ccaccaaaaatgttaagaaaaaacaaaatttggatgatttgcttttagccattaataagattgaagcttaattttatcaagtaattg 42966954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 36016747 - 36016714
Alignment:
Q  74 gatttgctttcagccaccagtaagattgaagctt 107  Q
    ||||||||||||||||||| ||||||||||||||    
T  36016747 gatttgctttcagccaccattaagattgaagctt 36016714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 10436583 - 10436785
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  10436583 attcccaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactt 10436682  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10436683 tatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 10436782  T
Q  213 agc 215  Q
    |||    
T  10436783 agc 10436785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 20406327 - 20406123
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||    
T  20406327 attcccaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccactagtaagattgaagcttaactt 20406228  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    ||||||||||||| |||||||||||||||||||||||||||  | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20406227 tatctagcaattgcttaatcgaagcttctgtttggtgaaaaatccgagcattcctttcaagtcaaatcacccacacacaagataaccatataagatgaaa 20406128  T
Q  213 agcgg 217  Q
    |||||    
T  20406127 agcgg 20406123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 15030024 - 15029826
Alignment:
Q  18 caagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatct 117  Q
    ||||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||||    
T  15030024 caagcaaggtaaaagatttaaccaccatgtatggtaggagaaaccaaaactatgatgattcgctttcaaccaccaataagattgaagcttaactttatct 15029925  T
Q  118 agcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagcg 216  Q
    |||||||||||||||||||||| ||||||||||||| ||  ||||||| |||||||||||||||||||| || ||||||||| |||||||| |||||||    
T  15029924 agcaattgattaatcgaagcttttgtttggtgaaaaacccaagcattcatttcaagccaaatcacccacgcataagataaccttataagattaaaagcg 15029826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 53459125 - 53459240
Alignment:
Q  79 gctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaa 178  Q
    ||||||||||||||||| |||||||| |||| ||||||||| |||||||| | ||| || ||| |||| |||||  || |||  || ||||| | |||||    
T  53459125 gctttcagccaccagtatgattgaagtttaattttatctagtaattgattgaacgaggcctctttttgatgaaagacccgagtgtttctttctatccaaa 53459224  T
Q  179 tcacccacacacaaga 194  Q
    ||||||||||||||||    
T  53459225 tcacccacacacaaga 53459240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 20692239 - 20692344
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||  ||||| |||||||| |||| || ||||||||||   || || |||| | |||||||||||||||||||||||| |||| ||| || || |    
T  20692239 caaggtaatggatttgaccaccaaaaatgataagagaaaacaaggttaggacgattcgttttcagccaccagtaagattgaaggttaattttgtcgagta 20692338  T
Q  122 attgat 127  Q
    ||||||    
T  20692339 attgat 20692344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 26369087 - 26369288
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  26369087 attcccaagcaaggtaaaagatttaaccaccaagaatagtaggagaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactt 26369186  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26369187 tatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 26369286  T
Q  213 ag 214  Q
    ||    
T  26369287 ag 26369288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 22580548 - 22580747
Alignment:
Q  18 caagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagcca---ccagtaagattgaagcttaacttta 114  Q
    ||||||||||||| |||| |||||||| ||||||||||| |||  ||||||| ||  ||| |||||||||||   |||||||||||||||||| ||||||    
T  22580548 caagcaaggtaaatgattcaaccaccacgaatggtaggaaaaagtaaaactaggactattcgctttcagccagcaccagtaagattgaagcttcacttta 22580647  T
Q  115 tctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaag 214  Q
    |||||||||||||||| ||||| || | |||| |||||  || || |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  22580648 tctagcaattgattaaacgaagtttatatttgttgaaagacccgaacattcctttcaagccaaatcacccgcacacaagatagccatataagattaaaag 22580747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 19021342 - 19021153
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    |||||||||||| | || |||||||| |||||| ||||||||||||||||| |  | || ||||||||||||||||| ||||| ||||||||||||||||    
T  19021342 aagcaaggtaaagggttcaaccaccatgaatggcaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatcta 19021243  T
Q  119 gcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
     |||||||||||  ||||||||| ||||||||||     ||||||| ||||||||||| ||||||||||||||||||| ||| |||||||    
T  19021242 acaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataagat 19021153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 22639511 - 22639322
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    |||||||||||| | || |||||||| |||||||||||||||||||||||| |  | ||  ||||||||||||| || ||||| ||||||||||||||||    
T  22639511 aagcaaggtaaatggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcactttcagccaccaatatgattggagcttaactttatcta 22639412  T
Q  119 gcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
     |||||||||||  ||||||||| ||||||||||     ||||||||||||||||||| ||||||||||||||||||| ||| |||||||    
T  22639411 acaattgattaaaagaagcttctttttggtgaaatatgcgagcattcctttcaagccagatcacccacacacaagatagccaaataagat 22639322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 40973432 - 40973625
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||||  || ||||||||  |||||||||| |||  ||||||| || | || ||||||||||||||||| |||||||| |||| ||||||||| |    
T  40973432 caaggtaaaaagttcaaccaccacaaatggtaggaaaaagtaaaactaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagta 40973531  T
Q  122 attgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagc 215  Q
    ||||||  | ||| || ||| |||| |||||  || |||| || ||||| | |||||| |||||||||||||| | |||||| |||| ||||||    
T  40973532 attgatggaacgaggcctctttttgatgaaagacccgagcgtttctttctatccaaataacccacacacaagaaagccatatgagattaaaagc 40973625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 25982339 - 25982444
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||| | || ||||||||  |||||||||| |||||||| ||  || | || ||||||||||||||||| |||||||| |||| ||||||||| |    
T  25982339 caaggtaaagggttcaaccaccacaaatggtaggaaaaaacaaagcttggacggttcgctttcagccaccagtatgattgaagtttaattttatctagta 25982438  T
Q  122 attgat 127  Q
    ||||||    
T  25982439 attgat 25982444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 6537036 - 6536978
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaa 70  Q
    |||| |||||||||||||| | || |||||||| |||||||||||||||||||||||||    
T  6537036 tattatcaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaa 6536978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 47590607 - 47590811
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||    
T  47590607 attcccaagcaaggtaaatgatttaaccaccaagaatggtaggagaaaacaaaactaggacgatttgctttcagccaccaataagattgaagcttaactt 47590706  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  47590707 tatctagcaattgattaatcgaaacttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccacacacaagataatcatataagatgaaa 47590806  T
Q  213 agcgg 217  Q
    |||||    
T  47590807 agcgg 47590811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 48640677 - 48640478
Alignment:
Q  18 caagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||    
T  48640677 caagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactatgacgatttgctttcagccaccagtaagattgaagattaactttatct 48640578  T
Q  118 agcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagcgg 217  Q
    |||| ||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48640577 agcagttgattaatcgaagcttctgtttggtgaaaaacccgagcattcatttcaagccaaatcacccacacacaagataaccatataagaagaaaagcgg 48640478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 56024988 - 56024790
Alignment:
Q  18 caagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatct 117  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  56024988 caagcaaggtaaaggatttaaacatcaagaatggtaggagaaaacaaaactaggacgatttgctttcagccaccagtaagattgaagcttaactttatct 56024889  T
Q  118 agcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagcg 216  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  56024888 agcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcaaccacacacaagataaccatataagatgaaaagcg 56024790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 40850762 - 40850560
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  40850762 attcccaagcaaggtaaaggatttaaccaccaagaatggtaggaaaaaacaaaactaggacgattagctttcagccaccagtaagattgaagcttaactt 40850663  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||  | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40850662 tatctagcaattgattaatcgaagcttctgtttggtgaaaaatccgagcattcatttcaagccaaatcacccacacacaagataaccatataagatgaaa 40850563  T
Q  213 agc 215  Q
    |||    
T  40850562 agc 40850560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 37870799 - 37870993
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| | || ||||||| ||||||||| |||||||||||| ||| |||    
T  37870799 tattctcaagcaaggtaaaggattcaaccaccatgaatggtaggagaaaacaaaaccaggacgatttgccttcagccactagtaagattgaaacttgact 37870898  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataag 206  Q
    |||||||||||||||||||  ||||||||| ||||||||||   | || |||||||||||||||||||||| |||||||| |||| ||| |||||    
T  37870899 ttatctagcaattgattaaaagaagcttctttttggtgaaagatccgatcattcctttcaagccaaatcactcacacacatgatagccaaataag 37870993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 36651889 - 36652078
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    |||||||||||| | || |||||||| ||||||||||||||||||||||||||  | || |||||||||||||| || ||||| ||||||||||||||||    
T  36651889 aagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaagtcggttcgctttcagccaccaatatgattggagcttaactttatcta 36651988  T
Q  119 gcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
     |||||||||||  ||||||||| ||||||||||     ||||||| ||||||||||| ||||||||||||||||||| ||| |||||||    
T  36651989 acaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataagat 36652078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 43499249 - 43499060
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    |||||||||||| | || |||||||| |||||||||||||||||||||||| |  | || ||||||||||||||||| ||||| ||||||||||||||||    
T  43499249 aagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatcta 43499150  T
Q  119 gcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
     |||||||||||  ||||||||| ||||||||||     ||||||| |||||| |||| ||||||||||||||||||| ||| |||||||    
T  43499149 acaattgattaaaagaagcttctttttggtgaaatatgcgagcatttctttcacgccagatcacccacacacaagatagccaaataagat 43499060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 9896647 - 9896843
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||| ||||||||||||| | || |||||||| |||||||||||||||||||||||  |  | || ||||||||||||||||| |||||||| ||||||    
T  9896647 tattcccaagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaacttgggcggttcgctttcagccaccagtatgattgaagtttaact 9896746  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
    ||||||| |||||||||||   |||||||| ||||||| ||     ||||||||||||||||||| ||||||||||||||||||| ||| |||||||    
T  9896747 ttatctaacaattgattaaaataagcttctttttggtggaatattcgagcattcctttcaagccagatcacccacacacaagatagccaaataagat 9896843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 42718522 - 42718333
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    |||||||||||| | || |||||||| ||||||||||||||||||||| || |  | || ||||||||||||||||| ||||| ||||||||||||||||    
T  42718522 aagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaattaggtcggttcgctttcagccaccagtatgattggagcttaactttatcta 42718423  T
Q  119 gcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
     |||||||||||   |||||||| ||||||||||     ||||||| ||||||||||| ||||||||||||||||||| ||| |||||||    
T  42718422 acaattgattaaaataagcttctttttggtgaaatatgcgagcatttctttcaagccagatcacccacacacaagatagccaaataagat 42718333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 39059862 - 39060046
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||| || |||||||||| | || |||||||| |||||||||||||||||||||||  | || || |||||||| |||||||| ||||||||||||| |    
T  39059862 tattcgcaggcaaggtaaatggttcaaccaccatgaatggtaggagaaaacaaaacttgggtggttcgctttcagtcaccagtatgattgaagcttaatt 39059961  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagata 196  Q
    ||||||| |||||||||||  ||||||||| ||||||| ||     |||||||||||||||| || |||||||||||||||||||    
T  39059962 ttatctaacaattgattaaaagaagcttctttttggtggaatattcgagcattcctttcaagtcagatcacccacacacaagata 39060046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 7743521 - 7743335
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||| | || |||||||| |||||||||||||||||||||||| |  | || ||||||| ||||||||| ||||||||||||||||||| || ||    
T  7743521 caaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcaaccaccagtatgattgaagcttaactttatttaaca 7743422  T
Q  122 attgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
    |||||||||  ||||||||| ||||||| ||     ||||||| ||||||||||| ||||||||||| ||||||| ||| |||||||    
T  7743421 attgattaaaagaagcttctttttggtggaatatgcgagcatttctttcaagccagatcacccacacgcaagatagccaaataagat 7743335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 23106851 - 23106938
Alignment:
Q  101 gaagcttaactttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacac 188  Q
    ||||||||| ||||||||||||||||||||  ||||||||| ||||||||||   | |||||||||||||||||||||||||||||||    
T  23106851 gaagcttaattttatctagcaattgattaaaagaagcttctttttggtgaaagatccgagcattcctttcaagccaaatcacccacac 23106938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 40345944 - 40346137
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||| | || ||||||||  |||||||||| ||| ||||  || ||   || ||||||||||||||||| |||||||| |||| ||||||||| |    
T  40345944 caaggtaaatggttcaaccaccacaaatggtaggaaaaagcaaaggtatgacagttcgctttcagccaccagtatgattgaagtttaattttatctagta 40346043  T
Q  122 attgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagc 215  Q
    ||||| | | ||| || ||| |||| |||||  || |||  || ||||| | ||||||||||||||||||||| | |||||| |||| ||||||    
T  40346044 attgaatgaacgaggcctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagc 40346137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 30598391 - 30598584
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||| | || ||||||||  |||||||||| ||| ||||  || | || || ||||||||||||||||| |||||||| |||| |||||| || |    
T  30598391 caaggtaaatggttcaaccaccacaaatggtaggaaaaagcaaaggtaggttggttcgctttcagccaccagtatgattgaagtttaattttatccagta 30598490  T
Q  122 attgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagc 215  Q
    ||||||| | |||  | ||| |||| |||||  |||| |  || ||||| | ||||||||||||||||||||| |  ||||| |||| ||||||    
T  30598491 attgattgaacgatacctctttttgatgaaagacctgtgtgtttctttctatccaaatcacccacacacaagaaagtcatatgagattaaaagc 30598584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 50771691 - 50771555
Alignment:
Q  79 gctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaa 178  Q
    ||||||||||||||||| ||||||||  ||| ||||||||| |||||||| | |||  | ||| |||| |||||  |  |||  || ||||| |||||||    
T  50771691 gctttcagccaccagtatgattgaagtataattttatctagtaattgattgaacgagacctctttttgatgaaagactcgagtgtttctttctagccaaa 50771592  T
Q  179 tcacccacacacaagataaccatataagatgaaaagc 215  Q
    |||||||||||||||| | |||||| |||| ||||||    
T  50771591 tcacccacacacaagaaagccatatgagattaaaagc 50771555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 40858172 - 40858376
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| ||||||||||| | ||||||||||| |||||||| ||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||||    
T  40858172 attcccaagcaaggtagaggatttaaccactaagaatggaaggagaaaacaaaactaggacgattagctttcagccatcagtaagattgaagcttaactt 40858271  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40858272 tatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcatttcaagccaaatcacccacacacaagataaccatataagatgaaa 40858371  T
Q  213 agcgg 217  Q
    |||||    
T  40858372 agcgg 40858376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 40871455 - 40871649
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||| |||    
T  40871455 tattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgact 40871554  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataag 206  Q
    |||||||||||||||||||  ||||||||| ||||||||||   | || ||||||||||||||||||||||||||||| | |||| ||| |||||    
T  40871555 ttatctagcaattgattaaaagaagcttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacaaatgatagccaaataag 40871649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 17194033 - 17194226
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||| ||| ||||||||| |||| |||||||| ||||||||||||| |||||||||| || ||||| ||||||||||||||| ||||||||||||||||    
T  17194033 tattcccaaacaaggtaaaggattcaaccaccacgaatggtaggagagaacaaaactatgacgattttctttcagccaccagtgagattgaagcttaact 17194132  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataag 206  Q
    |||||||||||||||||||  ||||||| |  ||||| |||    | ||||||||||||||| |||||||| ||||||||||||||||| |||||    
T  17194133 ttatctagcaattgattaaaagaagctttttattggt-aaagatttaagcattcctttcaagtcaaatcactcacacacaagataaccaaataag 17194226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 1032176 - 1031987
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    |||||||||||| | || |||||||| |||| |||||||||||||||||||   || || ||||||||||||||||| ||||||||||||||||||||||    
T  1032176 aagcaaggtaaatggttcaaccaccatgaatagtaggagaaaacaaaactattgtggttcgctttcagccaccagtatgattgaagcttaactttatcta 1032077  T
Q  119 gcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
      ||||||||||  ||||||||| ||||||||||     |||| |||||||||||| | ||||||||||||||| ||| ||| |||||||    
T  1032076 ataattgattaaaagaagcttctttttggtgaaatattcgagcgttcctttcaagctagatcacccacacacaatatagccaaataagat 1031987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 12623057 - 12623197
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||||||||||||||||| |||| ||||| || ||||||||| |||||||||||||| || ||||||| ||| ||||| |||||||||||||||| |||    
T  12623057 tattctcaagcaaggtaaatgattcaaccatcatgaatggtagaagaaaacaaaactaggacgatttgccttcggccacaagtaagattgaagcttgact 12623156  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaa 152  Q
    |||||||||||||| ||||  ||||| ||| ||||||||||    
T  12623157 ttatctagcaattgtttaaaagaagcctctttttggtgaaa 12623197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 196
Target Start/End: Original strand, 9942772 - 9942927
Alignment:
Q  41 accaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaagcttc 140  Q
    |||| |||||||||||||||||||||||| |  | || ||||||||||||||||| ||||| |||||||||||||||| |||||||||||  ||||||||    
T  9942772 accatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattggagcttaactttatctaacaattgattaaaagaagcttc 9942871  T
Q  141 tgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagata 196  Q
    | ||||||||||      |||||| ||||||||||| |||||||||||||||||||    
T  9942872 tttttggtgaaatatgcaagcatttctttcaagccagatcacccacacacaagata 9942927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 8124042 - 8123965
Alignment:
Q  47 aatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagcaatt 124  Q
    ||||||||||||||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  8124042 aatggtaggagaaaacaaaactaggacgattagctttcaaccaccagtaagattgaagcttaactttatctaacaatt 8123965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 32575412 - 32575219
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||| | || ||||||||  |||||||||| ||| ||||  || || | || ||||||||||||||||| |||||||| |||| ||||||||| |    
T  32575412 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagta 32575313  T
Q  122 attgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagc 215  Q
    ||||||| | ||| || ||| |||| |||||  || |||  || ||||| | ||||||||||||||||||||| | |||||| |||| ||||||    
T  32575312 attgattgaacgaggcctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagc 32575219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 19324167 - 19323986
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||| | || ||||||||  |||||||||| ||| ||||  || || | || ||||||||||||| ||| |||||||| |||| ||||||||| |    
T  19324167 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccggtatgattgaagtttaattttatctagta 19324068  T
Q  122 attgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatat 203  Q
    ||||||| | ||| || ||| |||| |||||  || |||| || ||||| | ||||||||||||||||||||| | ||||||    
T  19324067 attgattgaacgaggcctctttttgatgaaagacccgagcgtttctttctatccaaatcacccacacacaagaaagccatat 19323986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 18299607 - 18299799
Alignment:
Q  23 aaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagcaa 122  Q
    |||||||| | || ||||||||  |||||||||| ||| |||| ||| || | ||  |||||||||||||||| |||||||| |||| ||||||||| ||    
T  18299607 aaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaagctaggacggttccctttcagccaccagtatgattgaagtttaattttatctagtaa 18299706  T
Q  123 ttgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagc 215  Q
    |||||  | ||| || ||| |||| |||||  || ||||  | ||||| | ||||||||||||||||||||| | |||||| |||| ||||||    
T  18299707 ttgatggaacgaggcctctttttgatgaaagacccgagcgattctttctatccaaatcacccacacacaagaaagccatatgagattaaaagc 18299799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 38142182 - 38141989
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||| | || ||||||||  |||||||||| ||| ||||  || || | || ||||||||||||||||| |||||||| |||| ||||||||  |    
T  38142182 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctaata 38142083  T
Q  122 attgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagc 215  Q
    ||||| | | ||| || ||| |||| |||||  || |||  || ||||| | ||||||||||||||||||||| | |||||| |||| ||||||    
T  38142082 attgaatgaacgaggcctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagc 38141989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 15669634 - 15669442
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||| | || ||||||||  |||||||||| ||| ||||  || || | || ||||||||||||||||| |||||||| |||| ||||||||| |    
T  15669634 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagta 15669535  T
Q  122 attgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaag 214  Q
    ||||||| | | | || ||| ||||  ||||  || |||  || ||||| | | ||||||||||||||||||| | |||||| |||| |||||    
T  15669534 attgattgaacaaggcctctttttgaagaaagacccgagtgtttctttctatcgaaatcacccacacacaagaaagccatatgagattaaaag 15669442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 29126016 - 29126183
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||| | || ||||||||  |||||||||| ||| ||||  || || | || ||||||||||||||||| |||||||  |||| ||||||||| |    
T  29126016 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaaatttaattttatctagta 29126115  T
Q  122 attgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacaca 189  Q
    ||||||| | ||| || ||| |||| |||||  || |||  || ||||| | ||||||||||||||||    
T  29126116 attgattgaacgaggcctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacaca 29126183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 41767942 - 41768014
Alignment:
Q  55 gagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagcaattgat 127  Q
    ||||||||||| ||| || |||| ||||||||||| ||| |||||||||| |||| ||| || || |||||||    
T  41767942 gagaaaacaaagctaggacgattcgctttcagccatcagaaagattgaagtttaattttgtcgagtaattgat 41768014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 6029278 - 6029078
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactt 112  Q
    |||| ||||||||||||| ||||||||||||| | |||||||||||||||||||||| || |||| |||||||||||| | |||||||||||||||||||    
T  6029278 attcccaagcaaggtaaatgatttaaccaccatgtatggtaggagaaaacaaaactaggacgattcgctttcagccactaataagattgaagcttaactt 6029179  T
Q  113 tatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||    
T  6029178 tatctagcaattgattaatcgaagcttctgtttggtgaaaaacccgagcattcctttcaagccaaatcacccaaacacaagataaccatatacgatcaaa 6029079  T
Q  213 a 213  Q
    |    
T  6029078 a 6029078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 18972761 - 18972967
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||| ||||||||||| | |||| |||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  18972761 tattcccaagcaaggtatatgattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttgctttcagccacgagtaagattgaagcttaact 18972860  T
Q  112 ttatc-tagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatga 210  Q
    |||||  ||||||||||||| |||||||||| ||||||||||     ||||||||||||||||||||||||||||||||||||||| ||| ||||||| |    
T  18972861 ttatcaaagcaattgattaaacgaagcttctttttggtgaaagattagagcattcctttcaagccaaatcacccacacacaagatagccaaataagatta 18972960  T
Q  211 aaagcgg 217  Q
    | |||||    
T  18972961 agagcgg 18972967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 24393863 - 24393658
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||    
T  24393863 tattcccaagcaaggtaaaggattcaaccaccacgaatggtaggagaaaacaaaactaggacgatttactttcagccaccagtaagattgaggcttaact 24393764  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaa 211  Q
    ||||| | ||||||||||| |||||||||| ||||||||||      ||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||    
T  24393763 ttatcaaacaattgattaaacgaagcttctttttggtgaaagattccagcattcctttcatgccaaatcacccacacacaagatagccaaataagattaa 24393664  T
Q  212 aagcgg 217  Q
     |||||    
T  24393663 gagcgg 24393658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 12912401 - 12912595
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||| |||    
T  12912401 tattcccaagcaaggtaaaggattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgact 12912500  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataag 206  Q
    |||||||||||||||||||  ||||||||| ||||||||||   |  | |||||||||||||||| |||||||||||||| |||| ||| |||||    
T  12912501 ttatctagcaattgattaaaagaagcttctttttggtgaaagatccaatcattcctttcaagccatatcacccacacacatgatagccaaataag 12912595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 7093865 - 7093672
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||| | || ||||||||  |||||||||| ||| ||||  || || | || ||||||||||||||||| |||||||| |||| ||||||||| |    
T  7093865 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagta 7093766  T
Q  122 attgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagc 215  Q
    ||||| | | ||| || ||| |||| |||||  ||||||  || ||||| | ||||||||||||||||||||| | |||||| |||| ||||||    
T  7093765 attgaatgaacgaggcctctttttgatgaaagacctgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagc 7093672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 30987217 - 30987330
Alignment:
Q  76 tttgctttcagccaccagtaagattgaagcttaactttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagcc 175  Q
    ||||||||||||||||| || |||||||| |||| ||||||||| ||||||| || ||| | |||| ||||| |||||  ||| ||||| ||| ||  ||    
T  30987217 tttgctttcagccaccaatatgattgaagtttaattttatctagtaattgatgaaacgaggtttctttttggagaaaaatctgggcatttcttccagccc 30987316  T
Q  176 aaatcacccacaca 189  Q
    ||||||||||||||    
T  30987317 aaatcacccacaca 30987330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 8753092 - 8753182
Alignment:
Q  37 aaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagcaattgat 127  Q
    ||||||||| |||| || ||||||||||| ||| || |||| ||||||| ||||||| |||||||||| |||| ||| || || |||||||    
T  8753092 aaccaccaaaaatgataagagaaaacaaagctaggacgattcgctttcaaccaccagaaagattgaagtttaattttgtcgagtaattgat 8753182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 12250979 - 12250923
Alignment:
Q  62 caaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    ||||| || ||||||||||||||| |||| || | ||||| ||||||||||||||||    
T  12250979 caaaattatgatgatttgctttcaaccactagaaggattggagcttaactttatcta 12250923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 32737327 - 32737387
Alignment:
Q  143 tttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatat 203  Q
    ||||||||||  || |||| || ||||||| ||||||||| ||||||||||||| ||||||    
T  32737327 tttggtgaaagacccgagcgtttctttcaatccaaatcactcacacacaagatagccatat 32737387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 23741 - 23541
Alignment:
Q  18 caagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatc- 116  Q
    ||||||||||||| |||| |||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||||     
T  23741 caagcaaggtaaatgattcaaccaccacgaatggtaggagaaaacaaaactatgacgatttgctttcagccacgagtaagaatgaagcttaactttatca 23642  T
Q  117 tagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagcg 216  Q
     ||||||||||||| |||||||||| ||||||||||    |||||||||||||||||||||||||||||||||||||||| ||| ||||||| || ||||    
T  23641 aagcaattgattaaacgaagcttctttttggtgaaagatttgagcattcctttcaagccaaatcacccacacacaagatagccaaataagattaagagcg 23542  T
Q  217 g 217  Q
    |    
T  23541 g 23541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 94827 - 94633
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaact 111  Q
    ||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||| |||    
T  94827 tattctcaagcaaggtaaatgattcaaccaccatgaatggtaggagaaaacaaaactaggacgatttgccttcagccaccagtaagattgaagcttgact 94728  T
Q  112 ttatctagcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataag 206  Q
    |||||||||||||||||||  ||||||||| ||||||||||   | || ||||||||||||||||||||||||||||| | |||| ||| |||||    
T  94727 ttatctagcaattgattaaaagaagcttctttttggtgaaagatccgatcattcctttcaagccaaatcacccacacaaatgatagccaaataag 94633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 9529 - 9340
Alignment:
Q  19 aagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatcta 118  Q
    |||||||||||| | || |||||||| |||||||||||||||||||||||| |  | || ||||||||||||||||| ||||||||||||||||||||||    
T  9529 aagcaaggtaaagggttcaaccaccatgaatggtaggagaaaacaaaactaggtcggttcgctttcagccaccagtatgattgaagcttaactttatcta 9430  T
Q  119 gcaattgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagat 208  Q
     |||||||||||   |||||||| ||||||||||     ||||||||||||||||||| ||||||||||||||||||| ||| |||||||    
T  9429 acaattgattaaaataagcttctttttggtgaaatatgcgagcattcctttcaagccagatcacccacacacaagatagccaaataagat 9340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 9043 - 8850
Alignment:
Q  22 caaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaactaagatgatttgctttcagccaccagtaagattgaagcttaactttatctagca 121  Q
    ||||||||| | || ||||||||  |||||||||| ||| |||| ||| || | || ||||||||||||||||| |||||||| |||| ||||||||| |    
T  9043 caaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaagctaggacggttcgctttcagccaccagtatgattgaagtttaattttatctagta 8944  T
Q  122 attgattaatcgaagcttctgtttggtgaaaagcctgagcattcctttcaagccaaatcacccacacacaagataaccatataagatgaaaagc 215  Q
    |||||| || ||| || ||| || | |||||  || |||| || ||||| | ||||||||||||||||||||| | |||||| |||| ||||||    
T  8943 attgatgaaacgaggcctcttttagatgaaagacccgagcgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagc 8850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 124342 - 124397
Alignment:
Q  13 attctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaact 68  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  124342 attcccaagcaaggtaaaggatttaaccaccaagaatggtaggagaaaacaaaact 124397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 924 - 867
Alignment:
Q  12 tattctcaagcaaggtaaaagatttaaccaccaagaatggtaggagaaaacaaaacta 69  Q
    ||||| |||||||||| || |||| |||||||| ||||||||||||||||||||||||    
T  924 tattcccaagcaaggttaaggattcaaccaccatgaatggtaggagaaaacaaaacta 867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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