View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8439_low_16 (Length: 250)
Name: NF8439_low_16
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8439_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 52092300 - 52092067
Alignment:
| Q |
1 |
taagtatcttgtttgtggagatagaattcatgtgataaaaatagttgcaagttgtgtgtgtatctttgtttatactttgtctatgtgctgttatgtgttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52092300 |
taagtatcttgtttgtggagatagaattcatgtgataaaaatagttgcaggttgtgtgtgtatctttgtttatactt-gtctatgtgctgttatgtgttc |
52092202 |
T |
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| Q |
101 |
caaagcatggaagtgtaaaaggaaccttttgtcagcttcttttgcatcttttccgagctcaatatagttcccattaatgatataagattgtaactgtgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52092201 |
caaagcatggaagtgtaaaaggaaccttttgtcagcttcttttgcatcttttccgagctcaatatagttcccattaatgatataagattgtaactgtgaa |
52092102 |
T |
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| Q |
201 |
atactgcatccccttctaatgtattttgtattaat |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
52092101 |
atactgcatccccttctaatgtattttgtattaat |
52092067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 52082078 - 52081945
Alignment:
| Q |
1 |
taagtatcttgtttgtggagatagaattcatgtgataaaaatagttgcaagttgtgtgtgtatctttgtttatactttgtctatgtgctgttatgtgttc |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||| | |||| |||||||||| |
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| T |
52082078 |
taagtatcttgtttgtggagatagcattcatgtgataaaaatagttccaag--ctgtgtgtatcattgtttatgc-ttgt----------ttatgtgttc |
52081992 |
T |
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| Q |
101 |
caaagcatggaagtgtaaaaggaaccttttgtcagcttcttttgcat |
147 |
Q |
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||||| |||||||||||||||| || ||||||| | ||||||||||| |
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| T |
52081991 |
caaaggatggaagtgtaaaaggtacattttgtcggtttcttttgcat |
52081945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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