View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8439_low_18 (Length: 245)
Name: NF8439_low_18
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8439_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 8136522 - 8136623
Alignment:
| Q |
73 |
tgtgcgtttgagagcctttggaattgataatagagaagctacaatgtaggaatctcttcaaacgcacgttcacaacaaattcaccgtcaatacaaattta |
172 |
Q |
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| T |
8136522 |
tgtgcgtttgagagcctttggaattgataatagagaagctacaatgtaggaatctcttcaaacgcacgttcacaacaaattcaccgtcaatacaaatata |
8136621 |
T |
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| Q |
173 |
ga |
174 |
Q |
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|| |
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| T |
8136622 |
ga |
8136623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 8136642 - 8136706
Alignment:
| Q |
163 |
tacaaatttagaacatcagtacaagtttaactaatacaatatctaaccaactttggtgtagctat |
227 |
Q |
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| T |
8136642 |
tacaaatttaaaacatcagtacaagtttaactaatacaatatctaaccaactttggtgtagctat |
8136706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 22179260 - 22179133
Alignment:
| Q |
42 |
tgtgtttgttttgacgtttcatcattgccattgtgcgtttgagagcctttggaattgataatagagaagctacaa--tgtaggaatctcttcaaacgcac |
139 |
Q |
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| T |
22179260 |
tgtgtttgttttgccgtttcaccactgccactgtgcgtttgagagccttgagaattgataatagagaagccacaaattgtagg-atctctcctaatgcac |
22179162 |
T |
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| Q |
140 |
gttcacaacaaattcaccgtcaatacaaa |
168 |
Q |
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| T |
22179161 |
gttcacgagaaatccaccgccaacacaaa |
22179133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 47336553 - 47336462
Alignment:
| Q |
78 |
gtttgagagcctttggaattgataatagagaagctacaa--tgtaggaatctcttcaaacgcacgttcacaacaaattcaccgtcaatacaaa |
168 |
Q |
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| T |
47336553 |
gtttgagagccttggaaattgataatagagaagctacaaattgtatg-atctctcgaaacgcacttttacaacaaatccatcctcaatacaaa |
47336462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 32436040 - 32436164
Alignment:
| Q |
45 |
gtttgttttgacgtttcatcattgccattgtgcgtttgagagcctttggaattgataatagagaagctacaatgta-ggaatctcttcaaacgcacgttc |
143 |
Q |
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|||||||||||||||||| |||| | |||| ||||||||| ||| |||||| ||||||||||||||| || || | |||||| |||||| ||||| |
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| T |
32436040 |
gtttgttttgacgtttcaccattattactgtgtgtttgagagtcttgggaattaataatagagaagctagaagttatagtatctctctaaacgctcgttc |
32436139 |
T |
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| Q |
144 |
acaacaaattcaccgtcaatacaaa |
168 |
Q |
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||||||||| |||| ||||||||| |
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| T |
32436140 |
acaacaaatctaccgccaatacaaa |
32436164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 40195823 - 40195783
Alignment:
| Q |
124 |
atctcttcaaacgcacgttcacaacaaattcaccgtcaata |
164 |
Q |
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|||||| |||||||||||||||||||||| ||||| ||||| |
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| T |
40195823 |
atctctccaaacgcacgttcacaacaaatccaccgccaata |
40195783 |
T |
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