View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8439_low_20 (Length: 237)
Name: NF8439_low_20
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8439_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17524767 - 17524545
Alignment:
| Q |
1 |
aaatggacagtaatcctcaacaaagtctcagcaccatcagtagcaatctgtccaggtggaataagaggtctcagttcagcaaacccttttgcatacttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17524767 |
aaatggacagtaatcctcaacaaagtctcagcaccatcagtagcaatctgtccaggtggaataagaggtctcagttcagcaaacccttttgcatacttaa |
17524668 |
T |
|
| Q |
101 |
acttccccgtccctcctacaaccgacaatcgcgacatagtacttccaatcttatacaaaccataaaaattcaaactatcaccatactcccctccttcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17524667 |
acttccccgtccctcctacaaccgacaatcgcgacatagtacttccaatcttatacaaaccataaaaattcaaactatcaccatactcccctccttcaaa |
17524568 |
T |
|
| Q |
201 |
aagtgctgtaaaaaccatcatct |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
17524567 |
aagtgctgtaaaaaccatcatct |
17524545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 17658689 - 17658911
Alignment:
| Q |
1 |
aaatggacagtaatcctcaacaaagtctcagcaccatcagtagcaatctgtccaggtggaataagaggtctcagttcagcaaacccttttgcatacttaa |
100 |
Q |
| |
|
||||||||| | ||||||| ||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| | |||| ||| | |
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| T |
17658689 |
aaatggacactcatcctcagcaatgtctcagcaccatcagtggcaatctgtcctggtgggataagaggtctcagttctgcaaaccccctggcattcttga |
17658788 |
T |
|
| Q |
101 |
acttccccgtccctcctacaaccgacaatcgcgacatagtacttccaatcttatacaaaccataaaaattcaaactatcaccatactcccctccttcaaa |
200 |
Q |
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|||| || || || |||| || || ||||| ||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| |
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| T |
17658789 |
actttcctgtgccccctattactgataatcgtgacatggtacttcctatcttatacaaaccataaaagttcaagctatctccatattcccctccttcaaa |
17658888 |
T |
|
| Q |
201 |
aagtgctgtaaaaaccatcatct |
223 |
Q |
| |
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| ||||| ||||||||||||| |
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| T |
17658889 |
caaggctgtgaaaaccatcatct |
17658911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17527905 - 17527683
Alignment:
| Q |
1 |
aaatggacagtaatcctcaacaaagtctcagcaccatcagtagcaatctgtccaggtggaataagaggtctcagttcagcaaacccttttgcatacttaa |
100 |
Q |
| |
|
||||||||| | ||||||| ||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| | |||| ||| | |
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|
| T |
17527905 |
aaatggacactcatcctcagcaatgtctcagcaccatcagtggcaatctgtcctggtgggataagaggtctcagttctgcaaaccccctggcattcttga |
17527806 |
T |
|
| Q |
101 |
acttccccgtccctcctacaaccgacaatcgcgacatagtacttccaatcttatacaaaccataaaaattcaaactatcaccatactcccctccttcaaa |
200 |
Q |
| |
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|||| || || || |||| || || ||||| |||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| |||||||| ||||| |
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|
| T |
17527805 |
actttcctgtgccccctattactgataatcgtgacatagtacttcctatcttgtacaaaccataaaagttcaagctatctccatattcccctccctcaaa |
17527706 |
T |
|
| Q |
201 |
aagtgctgtaaaaaccatcatct |
223 |
Q |
| |
|
| ||||| || |||||||||| |
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|
| T |
17527705 |
caaggctgtgaataccatcatct |
17527683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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