View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8439_low_6 (Length: 373)
Name: NF8439_low_6
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8439_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 670039 - 670240
Alignment:
| Q |
1 |
accatgaggagctctccctcccacccta----ctaatgatttcttaaatctaaannnnnnnnnncaaattttattataaccacaaaaagtaagttttatg |
96 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||||||| || ||||||| |
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| T |
670039 |
accatgaggagctctccctcccaacctagctactaatgatttcttaaatctacaaattttt---caaattttattataaccacaaaaagcaaattttatg |
670135 |
T |
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| Q |
97 |
tcaagaaccatacaaaatacaactatgctttgtccttatagtgatccgcatttgctcatcaagaaagagattacaacaagtttggagcataacttacctt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
670136 |
tcaagaaccatacaaaatacaactatgctttgtccttatagtgatctgcatttgctcatcaagaaagagattacaacaagtttggagcataacttacctt |
670235 |
T |
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| Q |
197 |
gacat |
201 |
Q |
| |
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||||| |
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| T |
670236 |
gacat |
670240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 196 - 355
Target Start/End: Original strand, 670548 - 670710
Alignment:
| Q |
196 |
tgacatggttaccatggatagtcagggcactatatataggatgagtcagtaactaacaa---aaagacttgttgagcaagttacataacgtcgtcgaatt |
292 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
670548 |
tgacttggttaccatggatagtcagggcactatatataggatgagtcactaactaataacagaaagacttgttgagcaagttacataacgtcgtcgaatt |
670647 |
T |
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| Q |
293 |
agacataagcttaagcaacactctactaggatattatataaccttctgttgtcttacaaatta |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
670648 |
agacataagcttaagcaacactctactaggatattatataactttctgttgtcttacagatta |
670710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 27467233 - 27467281
Alignment:
| Q |
224 |
actatatataggatgagtcagtaactaacaaaaagacttgttgagcaag |
272 |
Q |
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|||||||||||| ||||||| |||||||| ||||||||| |||||||| |
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| T |
27467233 |
actatatataggctgagtcactaactaaccgaaagacttgctgagcaag |
27467281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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