View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8439_low_7 (Length: 367)
Name: NF8439_low_7
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8439_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 8136047 - 8136369
Alignment:
| Q |
19 |
tttgcaagtcaggttatgtgaaccactgctgcttttacaattgagagtgaaacttctacatgaagatgaagaccaaaccttttaccatttgacctaaatg |
118 |
Q |
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| T |
8136047 |
tttgcaagtcaggttatgtgaaccactgctgcttttgtaattgagagtgaaacttctacataaag-----gaccaaaccttttaccatttgacctaaatg |
8136141 |
T |
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| Q |
119 |
taaaatcacatttggnnnnnnnnnnnnnnnntatcccccaccaattatatgatgtattaatgttgaaaaatgtatcatccttaatgcacacagaggcatg |
218 |
Q |
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| T |
8136142 |
taaaatcacatttgaaaaaaaaaataaaa---atcccccaccaattatatgatgtattaatgttgaaaaatgtatcatccttaatgcaagcggaggtatg |
8136238 |
T |
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| Q |
219 |
tgagtgtggagaaataggtatagtatccaagtaggaggcaaataacttattgcatttggcatatgtgacttgtgttcattatatttctttgagtaaatta |
318 |
Q |
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| T |
8136239 |
tgagtgtggagaaataggtataatatccaagtaggaggcaaataacttattgcatttggcatatgtgacttgtgttcattatatttctttgagtaaatta |
8136338 |
T |
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| Q |
319 |
gcattttgacccattaaattataaatgtaaa |
349 |
Q |
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| T |
8136339 |
gcattttgacccattaaattataaatgtaaa |
8136369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 8135016 - 8135071
Alignment:
| Q |
291 |
tgttcattatatttctttgagtaaattagcattttgacccattaaattataaatgt |
346 |
Q |
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| T |
8135016 |
tgttcagtctatttctttgcgtaaattagcattttgacccatgaaattataaatgt |
8135071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 8137292 - 8137218
Alignment:
| Q |
157 |
caccaattatatgatgtattaatgttgaaaaatgtatcatccttaatgcacacagaggcatgtgagtgtggagaa |
231 |
Q |
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| T |
8137292 |
caccaattatatgatgtattattgttgaacaatgcatagtccttaataaagacagagccatgtgaatgtgaagaa |
8137218 |
T |
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