View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8439_low_8 (Length: 359)
Name: NF8439_low_8
Description: NF8439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8439_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 7128908 - 7128574
Alignment:
| Q |
17 |
ataaagtgcaatcgaaactccgcgaaaaagttgatggccgaagatatttgcttgtcttggatgacaattggaatgaggatcgtgatctttggcttcaatt |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7128908 |
ataaaatgcaatcgaaactccgcgaaaaagttgatggccgaagatatttgcttgtcttggatgacaattggaatgaggatcgtgatctttggcttcaatt |
7128809 |
T |
|
| Q |
117 |
gatgacactgttgaaagacggcgcagaaggaagtaaaataattatcaccgcaagaagtgagaaggttgccaaggcaagtggttcatcttctatcttgttt |
216 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7128808 |
gatgacattgttgaaagacggcgcagaaggaagtaaaataattatcaccacaagaagtgagaaggttgccaaggcaagtggttcatcttctatcttgttt |
7128709 |
T |
|
| Q |
217 |
ttagagggtctcagtgaaaaacaatcttggacattatttagtcaattagcttttgagaatgacagagaactagagaatgaggaattggtgtcaattggca |
316 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7128708 |
ttaaagggtctcagtgaaaaacaatcttggacattatttagtcaattagcttttgagaatgacagagaactagagaatgaggaattggtgtcaattggca |
7128609 |
T |
|
| Q |
317 |
aggaaattgtgaaaaaatgttcaggggttcatctc |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
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| T |
7128608 |
aggaaattgtgaaaaaatgttcaggggttcctctc |
7128574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 351
Target Start/End: Original strand, 7520299 - 7520633
Alignment:
| Q |
17 |
ataaagtgcaatcgaaactccgcgaaaaagttgatggccgaagatatttgcttgtcttggatgacaattggaatgaggatcgtgatctttggcttcaatt |
116 |
Q |
| |
|
||||||| |||| | ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
7520299 |
ataaagttcaattggaactccgtgaaaaagttgaaggaagaagatatttgcttgtcttggatgacaattggaatgaggatcgtaatctttggcttgaatt |
7520398 |
T |
|
| Q |
117 |
gatgacactgttgaaagacggcgcagaaggaagtaaaataattatcaccgcaagaagtgagaaggttgccaaggcaagtggttcatcttctatcttgttt |
216 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | ||||||| |
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|
| T |
7520399 |
gatgacactgctgaaagatggcgcagaaggaagtaaaataattatcaccgcaagaagtgagatggttgccaaggcaagtggttcttctttcaccttgttt |
7520498 |
T |
|
| Q |
217 |
ttagagggtctcagtgaaaaacaatcttggacattatttagtcaattagcttttgagaatgacagagaactagagaatgaggaattggtgtcaattggca |
316 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
7520499 |
ttacagggtctcggtgaaaaacaatcttggacattatttagtcaattagcttttgagaatgagagagaactagagaatgaggaattggtgtcaattggca |
7520598 |
T |
|
| Q |
317 |
aggaaattgtgaaaaaatgttcaggggttcatctc |
351 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| |
|
|
| T |
7520599 |
aggaaattgtgaagaaatgttcaggggttcctctc |
7520633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 7528352 - 7528668
Alignment:
| Q |
20 |
aagtgcaatcgaaactccgcgaaaaagttgatggccgaagatatttgcttgtcttggatgacaattggaatgaggatcgtgatctttggcttcaattgat |
119 |
Q |
| |
|
||||||||| | |||||||| | |||||| | ||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||| |
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|
| T |
7528352 |
aagtgcaattggaactccgcaataaagttaaaggcaaaagatatttgcttgtcttggatgacaattggaatgagaaccgtaatctttggcttgaattgat |
7528451 |
T |
|
| Q |
120 |
gacactgttgaaagacggcgcagaaggaagtaaaataattatcaccgcaagaagtgagaaggttgccaaggcaagtggttcatcttctatcttgttttta |
219 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7528452 |
gatactgctgaaagacggcgcagaaggaagtaaaataattatcaccgcaagaagtgagatggttgccaaggcaagtggttcatcttctatcttgtttttg |
7528551 |
T |
|
| Q |
220 |
gagggtctcagtgaaaaacaatcttggacattatttagtcaattagcttttgagaatgacagagaactagagaatgaggaattggtgtcaattggcaagg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7528552 |
aagggtctcagtgaaaaacaatcttggacattatttagtcaattagcttttgagaatgacagagaactagagaatgaggaattggtgtcaattggcaagg |
7528651 |
T |
|
| Q |
320 |
aaattgtgaaaaaatgt |
336 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7528652 |
aaattgtgaaaaaatgt |
7528668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 7494635 - 7494966
Alignment:
| Q |
20 |
aagtgcaatcgaaactccgcgaaaaagttgatggccgaagatatttgcttgtcttggatgacaattggaatgaggatcgtgatctttggcttcaattgat |
119 |
Q |
| |
|
||||||||| | |||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
7494635 |
aagtgcaattggaactccgcgataaagttaaaggcaaaagatatttgcttgtcttggatgacaattggaatgaggatcgtaatctttggcttgaattgat |
7494734 |
T |
|
| Q |
120 |
gacactgttgaaagacggcgcagaaggaagtaaaataattatcaccgcaagaagtgagaaggttgccaaggcaagtggttcatcttctatcttgttttta |
219 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |||||| ||| |
|
|
| T |
7494735 |
gacactgctgaaagatggcgcagaaggaagtaaaataattatcaccgcaagaagtgagatggttgccaaggcaagtggttcttctttcaccttgttctta |
7494834 |
T |
|
| Q |
220 |
gagggtctcagtgaaaaacaatcttggacattatttagtcaattagcttttgagaatgacagagaactagagaatgaggaattggtgtcaattggcaagg |
319 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7494835 |
cagggtctcggtgaaaaacaatcttggacattatttagtcaattagcttttgagaatgagagagaactagagaatgaggaattggtgtcaattggcaagg |
7494934 |
T |
|
| Q |
320 |
aaattgtgaaaaaatgttcaggggttcatctc |
351 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| |
|
|
| T |
7494935 |
aaattgtgaagaaatgttcaggggttcctctc |
7494966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 7722182 - 7721853
Alignment:
| Q |
17 |
ataaagtgcaatcgaaactccgcgaaaaagttgatggccgaagatatttgcttgtcttggatgacaattggaatgaggatcgtgatctttggcttcaatt |
116 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7722182 |
ataaagtgcaatctatactccgtgaaaaagttgaagggataagatatttgcttgtcttggatgacaattggaatgaggatcgtgatctttggcttcaatt |
7722083 |
T |
|
| Q |
117 |
gatgacactgttgaaagacggcgcagaaggaagtaaaataattatcaccgcaagaagtgagaaggttgccaaggcaagtggttcatcttctatcttgttt |
216 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
7722082 |
gatgacactgctgaaagacggcacggaaggaagtaaaataattatcaccgcaagaagtgagaaggttgccaaggcaagtggtccatcttctatcttcaat |
7721983 |
T |
|
| Q |
217 |
ttagagggtctcagtgaaaaacaatcttggacattatttagtcaattagcttttgagaatgacagagaactagagaatgaggaattggtgtcaattggca |
316 |
Q |
| |
|
||| |||| ||| ||||||| ||||||||| ||||| |||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7721982 |
ttaaagggactcgatgaaaaagaatcttggagattatatagtcagttaacttttgagaatttcagagaactagagaatgaggaattggtgtcaattggca |
7721883 |
T |
|
| Q |
317 |
aggaaattgtgaaaaaatgttcaggggttc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7721882 |
aggaaattgtgaaaaaatgttcaggggttc |
7721853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 7482230 - 7482549
Alignment:
| Q |
17 |
ataaagtgcaatcgaaactccgcgaaaaagttgatggccgaagatatttgcttgtcttggatgacaattggaatgaggatcgtgatctttggcttcaatt |
116 |
Q |
| |
|
|||||||||||| | | ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7482230 |
ataaagtgcaattggagctccgtgaaaaagttgaaggaagaagatatttgcttgtcttggatgacaattggaatgaggatcgtgatctttggcttgaatt |
7482329 |
T |
|
| Q |
117 |
gatgacactgttgaaagacggcgcagaaggaagtaaaataattatcaccgcaagaagtgagaaggttgccaaggcaagtggttcatcttctatcttgttt |
216 |
Q |
| |
|
||||| |||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
7482330 |
gatgagactgctgaaaggcggagcaaaaggaagtaaaataattatcaccgcaagaagtgagaaggttgccaaggcaagtggtacatcttctatcttcaat |
7482429 |
T |
|
| Q |
217 |
ttagagggtctcagtgaaaaacaatcttggacattatttagtcaattagcttttgagaatgacagagaactagagaatgaggaattggtgtcaattggca |
316 |
Q |
| |
|
||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||| |
|
|
| T |
7482430 |
ttaaagggtctggatgaaaaacaatcttggagattatttagtcaattagcttttgagaatgacaaagaacaggagaatgaggaatttgtgtcagttggca |
7482529 |
T |
|
| Q |
317 |
aggaaattgtgaaaaaatgt |
336 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7482530 |
aggaaattgtgaaaaaatgt |
7482549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 344
Target Start/End: Complemental strand, 16750148 - 16749862
Alignment:
| Q |
58 |
agatatttgcttgtcttggatgacaattggaatgaggatcgtgatctttggcttcaattgatgacactgttgaaagacggcgcagaaggaagtaaaataa |
157 |
Q |
| |
|
||||||||||| | || ||||||| ||||||||||| ||||| ||||||||| |||||||||||||||| || || ||| ||||||||||||| |
|
|
| T |
16750148 |
agatatttgctcattttagatgacatgtggaatgaggagcgtgaaaattggcttcagttgatgacactgttgagggatggagcaaaaggaagtaaaattg |
16750049 |
T |
|
| Q |
158 |
ttatcaccgcaagaagtgagaaggttgccaaggcaagtggttcatcttctatcttgtttttagagggtctcagtgaaaaacaatcttggacattatttag |
257 |
Q |
| |
|
| || || |||| || |||| ||| |||||| |||||| ||||||| |||| | |||| ||||||| ||||||||||||||||| || || || |
|
|
| T |
16750048 |
tcataactacaaggagcgagacggtggccaagataagtggaacatcttccctcttctctttaaagggtcttgatgaaaaacaatcttggaatttgttcag |
16749949 |
T |
|
| Q |
258 |
tcaattagcttttgagaatgacagagaactagagaatgaggaattggtgtcaattggcaaggaaattgtgaaaaaatgttcaggggt |
344 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||| | |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16749948 |
tcaattagcttttgagaatcgaaaagaatcagagaatccaatttgggtgtcaattggcaaggaaatttcaaaaaaatgttcaggggt |
16749862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 32727274 - 32727238
Alignment:
| Q |
310 |
attggcaaggaaattgtgaaaaaatgttcaggggttc |
346 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
32727274 |
attggcaaagaaattgtgaaaaaatgtgcaggggttc |
32727238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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