View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8440_high_10 (Length: 278)
Name: NF8440_high_10
Description: NF8440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8440_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 5 - 262
Target Start/End: Complemental strand, 7744721 - 7744464
Alignment:
| Q |
5 |
cggacacaacattaacaccgacacatagacatcgtcatcagtaatgatttggaaaatggaagtactgattacaaccacatgtatagttattggataccaa |
104 |
Q |
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| T |
7744721 |
cggacacaacattaacaccgacacatagacatcgtcatcagtaatgatttggaaaatggaagtactgattacaaccacatgtatagttattggataccaa |
7744622 |
T |
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| Q |
105 |
caacgtgtcatataccagatacgccttcgatcatctagtacagctcagattcaactgcatgcacattgttactgtacttgacctagaacaaaaggatgtt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7744621 |
caacgtgtcatataccagatacgccttcgatcatctagtacagctcagattcaactgcatgcacattgttactgtacttgacctagaacaaaaggatgtt |
7744522 |
T |
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| Q |
205 |
tcatggaggaatatgagagtatcctacatagtagtacctgtgccactttatagacttg |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7744521 |
tcatggaggaatatgagagtatcctacatagtagtacctgtgccactttatagacttg |
7744464 |
T |
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