View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8440_high_12 (Length: 218)
Name: NF8440_high_12
Description: NF8440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8440_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 58 - 202
Target Start/End: Original strand, 42286453 - 42286597
Alignment:
| Q |
58 |
gtattattttctcaaaaaacaagcataatgaaaccctaaatcatgaacatgagttagggctctgaatttcttttacaaaaaagctatataagaactatgt |
157 |
Q |
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| T |
42286453 |
gtattattttctcaaaaaacaagcataatgaaaccctaaatcatgaacatgagttagggctctgaatttcttttacaaaaaagctatataagaactatgt |
42286552 |
T |
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| Q |
158 |
ttagggtgcatgaagtctcctccaattttattctcaaaagcatat |
202 |
Q |
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| T |
42286553 |
ttagggtgcatgcagtctcctccaattttattctcaaaagcatat |
42286597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42286393 - 42286431
Alignment:
| Q |
1 |
tattacttaaaacttcaacatgcacacacccttctcgaa |
39 |
Q |
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| T |
42286393 |
tattacttaaagcttcaacatgcacacacccttctcgaa |
42286431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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