View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8440_high_2 (Length: 652)

Name: NF8440_high_2
Description: NF8440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8440_high_2
NF8440_high_2
[»] chr6 (3 HSPs)
chr6 (4-637)||(11320263-11320906)
chr6 (98-158)||(25397913-25397973)
chr6 (280-347)||(6932844-6932911)
[»] chr4 (16 HSPs)
chr4 (14-215)||(24857879-24858074)
chr4 (540-605)||(18899628-18899693)
chr4 (537-605)||(6585543-6585611)
chr4 (294-389)||(6585174-6585268)
chr4 (25-156)||(6407936-6408062)
chr4 (325-374)||(26467910-26467959)
chr4 (100-160)||(22746495-22746555)
chr4 (100-158)||(22748884-22748942)
chr4 (326-382)||(9397863-9397919)
chr4 (347-389)||(23630926-23630968)
chr4 (20-158)||(12753722-12753855)
chr4 (274-382)||(1874276-1874384)
chr4 (274-382)||(12659470-12659578)
chr4 (274-382)||(16325998-16326106)
chr4 (537-624)||(26653422-26653510)
chr4 (274-382)||(30673983-30674091)
[»] chr1 (15 HSPs)
chr1 (291-389)||(17776521-17776619)
chr1 (98-158)||(27317601-27317661)
chr1 (471-541)||(14604197-14604267)
chr1 (471-541)||(14604421-14604491)
chr1 (93-158)||(145484-145549)
chr1 (113-216)||(15552805-15552908)
chr1 (325-382)||(32808539-32808596)
chr1 (13-158)||(3850430-3850570)
chr1 (274-382)||(18535263-18535371)
chr1 (471-541)||(14604645-14604715)
chr1 (274-382)||(31093231-31093339)
chr1 (274-382)||(37357013-37357121)
chr1 (294-340)||(26028499-26028545)
chr1 (280-349)||(27417733-27417802)
chr1 (293-361)||(28519066-28519134)
[»] chr7 (10 HSPs)
chr7 (293-389)||(8049264-8049360)
chr7 (274-349)||(5998125-5998200)
chr7 (58-158)||(8049036-8049132)
chr7 (274-382)||(340577-340685)
chr7 (326-389)||(14997768-14997830)
chr7 (326-389)||(20362419-20362482)
chr7 (93-159)||(34322347-34322413)
chr7 (92-158)||(34326296-34326362)
chr7 (293-382)||(8247877-8247966)
chr7 (13-85)||(19203726-19203797)
[»] chr2 (11 HSPs)
chr2 (57-158)||(18845568-18845665)
chr2 (240-382)||(26539006-26539148)
chr2 (293-389)||(13494812-13494908)
chr2 (543-629)||(16423041-16423124)
chr2 (274-361)||(43287673-43287760)
chr2 (55-158)||(16243187-16243286)
chr2 (342-380)||(9070603-9070641)
chr2 (55-158)||(16423575-16423674)
chr2 (339-389)||(17842813-17842863)
chr2 (93-159)||(18557638-18557704)
chr2 (99-157)||(18845469-18845527)
[»] chr3 (5 HSPs)
chr3 (93-158)||(15636386-15636451)
chr3 (294-389)||(10937061-10937156)
chr3 (274-382)||(21883191-21883299)
chr3 (543-605)||(10936720-10936782)
chr3 (274-382)||(49487008-49487116)
[»] chr5 (6 HSPs)
chr5 (60-151)||(11713277-11713364)
chr5 (274-385)||(16673273-16673384)
chr5 (274-382)||(35264824-35264932)
chr5 (126-187)||(18080079-18080140)
chr5 (294-382)||(21171490-21171578)
chr5 (274-382)||(23053662-23053770)
[»] scaffold1457 (2 HSPs)
scaffold1457 (471-541)||(1474-1544)
scaffold1457 (232-382)||(1203-1352)
[»] chr8 (1 HSPs)
chr8 (93-158)||(22274726-22274791)
[»] scaffold0102 (1 HSPs)
scaffold0102 (293-361)||(13814-13881)
[»] scaffold0014 (1 HSPs)
scaffold0014 (294-382)||(111642-111730)


Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 4 - 637
Target Start/End: Complemental strand, 11320906 - 11320263
Alignment:
Q  4 aaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagtaggagtt 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11320906 aaaagtatatctttaaattgcaatataagtcctatttataggatact---gaggtaaatgaataatcacgttacaatgcactcactagttagtaggagtt 11320810  T
Q  104 acaagtaagtggaaagttaatggatggacatccactaattgatatattcataacattcttctatagatgtccatctaagatatgtcatataaaaacctta 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||    
T  11320809 acaagtaagtggaaagttaatggatggacatccactaattgatatattcataacattcttttatggatgtccatctaagatatgtcttataaaaacctta 11320710  T
Q  204 ataagaaaaaaccttctcnnnnnnnnnntcctaatgaagggaaaagagtataatatccgatgtatctttttcgtttaaaaccctacaaagaaaactcagt 303  Q
    |||||||||||||||||           || |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  11320709 ataagaaaaaaccttct-gaaaaaaaaatcataataaagggaaaagagtataatatccgatgtatctttctcatttaaaaccctacaaagaaaactcagt 11320611  T
Q  304 gggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgagatgatgaata------------ 391  Q
    ||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  11320610 gggacaaaaccatggtgaagagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgagatgatgaataccaatcttttgt 11320511  T
Q  392 -----ttgctcaaaatttttagttgtgagttactttgttaaaagtgttgaagattatcacaatatttagatcactagtattataaagatcatatgtgaaa 486  Q
         ||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||||||    
T  11320510 atccgttgctcaaattttttagttgcgagttactttgttaaaagtgttaaagattatcacaatatttagatcacta---ttataaagatcatatgtgaaa 11320414  T
Q  487 aagaactttgaaaaacatgcttttgttctatctagcttaatgtatcatcctttcattatgagcaacacacaaataacttccatatcaattataacaaagt 586  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  11320413 aagaactttgaaaaacatgcttttgttctatcttgcttaatgtatcatcctttcattatgagcaacacacatataacttgcatatcaattataacaaagt 11320314  T
Q  587 aacaaataatatatcataataacatgagtaattagcaaggtacataattgt 637  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  11320313 aacaaataatatatcataataacatgagtaattagtaaggtacattattgt 11320263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 25397973 - 25397913
Alignment:
Q  98 ggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 158  Q
    ||||||||||| | |||||| | |||||||||||||||||||||| |||||||||||||||    
T  25397973 ggagttacaagcatgtggaaggataatggatggacatccactaatagatatattcataaca 25397913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 6932911 - 6932844
Alignment:
Q  280 aaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatattt 347  Q
    |||||| ||| | |||||||||||| || ||||| ||||| ||| |||||||||||||||| ||||||    
T  6932911 aaaaccttaccaggaaaactcagtgagataaaactatagttaaaggaaaaagagtgcagaacatattt 6932844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 24857879 - 24858074
Alignment:
Q  14 ctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagt 113  Q
    ||||| |||| | ||||| |||||||||||||| |||||  |||||||||||||| ||| ||||||| |||| ||| ||     | ||||||||||| ||    
T  24857879 ctttacattgcattataaatcctatttataggacacaaat-aggtaaatgaataagcacattacaatccacttactggtg----gaagttacaagtatgt 24857973  T
Q  114 ggaaagttaatggatggacatccactaattgatatattcataacattcttctatagatgtccatctaagatatgtcatataaaaaccttaataagaaaaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||  | |||||||||| |  ||||| |  || ||||||||| |||||||||    
T  24857974 ggaaagttaatggatggacatccactaattgatatattcataacact-ttcccttgatgtccatcgacaatatgcctaattaaaaccttactaagaaaaa 24858072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 605
Target Start/End: Original strand, 18899628 - 18899693
Alignment:
Q  540 cattatgagcaacacacaaataacttccatatcaattataacaaagtaacaaataatatatcataa 605  Q
    ||||||||||| || ||||||||| | |||||| | ||||||||||||||||||||||||||||||    
T  18899628 cattatgagcatcaaacaaataacctgcatatctaatataacaaagtaacaaataatatatcataa 18899693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 537 - 605
Target Start/End: Original strand, 6585543 - 6585611
Alignment:
Q  537 tttcattatgagcaacacacaaataacttccatatcaattataacaaagtaacaaataatatatcataa 605  Q
    |||||||||| ||| |||||||| ||||| ||| || | ||||||||||||||||||||||||||||||    
T  6585543 tttcattatgggcatcacacaaagaacttgcatttctaatataacaaagtaacaaataatatatcataa 6585611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 389
Target Start/End: Original strand, 6585174 - 6585268
Alignment:
Q  294 aaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgagatgatgaa 389  Q
    |||||| |||||||||||||||| || ||  ||||||||||||| ||||||||||| ||| |||||| | ||||||||||||| | ||| ||||||    
T  6585174 aaaactaagtgggacaaaaccatggttaagggaaaaagagtgcaaaatatatttatatctccccctc-atcaaacaatcatctcttagacgatgaa 6585268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 6408062 - 6407936
Alignment:
Q  25 aatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaat 124  Q
    |||||| ||||||||||||||| |||||  ||||| |||||||| ||| ||||||| ||||   |||| ||| ||||||||||| | |||||| ||||||    
T  6408062 aatataggtcctatttataggacacaaat-aggtagatgaataaccactttacaatccact---tagt-agtgggagttacaaggatgtggaaggttaat 6407968  T
Q  125 ggatggacatccactaattgatatattcataa 156  Q
     | |||||| |||| ||| |||||||||||||    
T  6407967 tgttggacacccacaaatagatatattcataa 6407936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 26467910 - 26467959
Alignment:
Q  325 gaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcat 374  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||||||||    
T  26467910 gaaaaagagtgcataatatatttatttctcccccttaaccaaacaatcat 26467959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 22746555 - 22746495
Alignment:
Q  100 agttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataacatt 160  Q
    ||||||||| | |||||| | ||||||||||||||||||| || |||||||||||||||||    
T  22746555 agttacaagcatgtggaagggtaatggatggacatccactgatagatatattcataacatt 22746495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 22748942 - 22748884
Alignment:
Q  100 agttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 158  Q
    ||||||||| | ||| || | |||||||||||||||||||||| |||||||||||||||    
T  22748942 agttacaagcatgtgaaagggtaatggatggacatccactaatagatatattcataaca 22748884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 9397919 - 9397863
Alignment:
Q  326 aaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgaga 382  Q
    |||||||||||| || || ||||||||| ||||||||||||| |||||||| |||||    
T  9397919 aaaaagagtgcataaaatctttatttctccccctcaaccaaataatcatctatgaga 9397863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 347 - 389
Target Start/End: Original strand, 23630926 - 23630968
Alignment:
Q  347 tatttctgcccctcaaccaaacaatcatctttgagatgatgaa 389  Q
    ||||||| |||||||||||||||||||||| ||||| ||||||    
T  23630926 tatttctccccctcaaccaaacaatcatctctgagacgatgaa 23630968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 12753722 - 12753855
Alignment:
Q  20 attgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaag 119  Q
    |||||||| || |||||||||||| || ||| |  ||||| |||||| ||||| ||||||| |||| |||||| ||    ||||||||| | |||||| |    
T  12753722 attgtaatgtaggtcctatttataagacacatat-aggtacatgaatgatcacattacaatccacttactagtgag----agttacaagcatgtggaagg 12753816  T
Q  120 ttaatggatggacatccactaattgatatattcataaca 158  Q
     | || |||| ||||||||||||  ||||||||||||||    
T  12753817 gttatagatgaacatccactaatatatatattcataaca 12753855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 1874276 - 1874384
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatca 373  Q
    ||||| |||||| ||| | |||||| || |||||||||||||| || ||  |||||||||||||||| | |||||| ||| || ||||   | |||||||    
T  1874276 tcgttaaaaaccttaccaggaaaacccaatgggacaaaaccatggttaagggaaaaagagtgcagaacacatttatgtctccctctcataaagacaatca 1874375  T
Q  374 tctttgaga 382  Q
    ||| |||||    
T  1874376 tctatgaga 1874384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 12659470 - 12659578
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatca 373  Q
    ||||| |||||| ||| | |||||| || |||||||||| ||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||    
T  12659470 tcgttaaaaaccttaccaggaaaacccaatgggacaaaaacatggttaagggaaaaagagtgcagaacacatttatgtctccccctcataaagacaatca 12659569  T
Q  374 tctttgaga 382  Q
    ||| |||||    
T  12659570 tctatgaga 12659578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 16325998 - 16326106
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatca 373  Q
    ||||| |||||| ||| | |||||| || ||| |||||||||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||    
T  16325998 tcgttaaaaaccttaccaggaaaacccaatggaacaaaaccatggttaagggaaaaagagtgcagaacacatttatgtctccccctcataaagacaatca 16326097  T
Q  374 tctttgaga 382  Q
    ||| |||||    
T  16326098 tctatgaga 16326106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 624
Target Start/End: Complemental strand, 26653510 - 26653422
Alignment:
Q  537 tttcattatgagcaacacacaaataacttccatatcaattataacaaagtaa-caaataatatatcataataacatgagtaattagcaa 624  Q
    |||||||| ||||| |||||||||||| | ||| |  | ||||||||||||| | ||||||||||||| ||| ||||| || |||||||    
T  26653510 tttcattacgagcatcacacaaataacctgcatttataatataacaaagtaacctaataatatatcatcatagcatgaatagttagcaa 26653422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 30673983 - 30674091
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatca 373  Q
    ||||| |||||| ||| | |||||| || |||||||||| ||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||    
T  30673983 tcgttaaaaaccttaccaggaaaacccaatgggacaaaaacatggttaagggaaaaagagtgcagaacacatttatgtctccccctcataaagacaatca 30674082  T
Q  374 tctttgaga 382  Q
    ||| |||||    
T  30674083 tctatgaga 30674091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 17776521 - 17776619
Alignment:
Q  291 aagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgagatgatgaa 389  Q
    ||||||||||||| |||||||||||  || || |||||||  |||||||||||||||||||||  ||||||||||||||||||||| |||||| |||||    
T  17776521 aagaaaactcagttggacaaaaccacggtgaagagaaaaattgtgcagaatatatttatttctcaccctcaaccaaacaatcatctatgagattatgaa 17776619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 27317661 - 27317601
Alignment:
Q  98 ggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 158  Q
    ||||||||| ||| |||||| |||||||||||||||||||||||||| |||||||||||||    
T  27317661 ggagttacatgtatgtggaaggttaatggatggacatccactaattgttatattcataaca 27317601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 471 - 541
Target Start/End: Complemental strand, 14604267 - 14604197
Alignment:
Q  471 aagatcatatgtgaaaaagaactttgaaaaacatgcttttgttctatctagcttaatgtatcatcctttca 541  Q
    ||||||||||| ||||||||||||||||||| || ||||||||| ||||  ||||||||| ||||||||||    
T  14604267 aagatcatatgagaaaaagaactttgaaaaatattcttttgttccatctcccttaatgtaccatcctttca 14604197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 471 - 541
Target Start/End: Complemental strand, 14604491 - 14604421
Alignment:
Q  471 aagatcatatgtgaaaaagaactttgaaaaacatgcttttgttctatctagcttaatgtatcatcctttca 541  Q
    ||||||||||| ||||||||||||||||||| || ||||||||| ||||  ||||||||| ||||||||||    
T  14604491 aagatcatatgagaaaaagaactttgaaaaatattcttttgttccatctcccttaatgtaccatcctttca 14604421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 145484 - 145549
Alignment:
Q  93 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 158  Q
    |||| ||||||||||| | |||||| | |||||||||||||||||||||| |||||||||||||||    
T  145484 tagtgggagttacaagcatgtggaagggtaatggatggacatccactaatagatatattcataaca 145549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 15552908 - 15552805
Alignment:
Q  113 tggaaagttaatggatggacatccactaattgatatattcataacattcttctatagatgtccatctaagatatgtcatataaaaaccttaataagaaaa 212  Q
    ||||| ||||| |||||||||||||||||| | ||||||||| ||| ||  |  |||||||||||| | ||||||||  || ||||||||| ||||||||    
T  15552908 tggaaggttaagggatggacatccactaataggtatattcattacactccaccttagatgtccatcaatgatatgtctcattaaaaccttactaagaaaa 15552809  T
Q  213 aacc 216  Q
    ||||    
T  15552808 aacc 15552805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 32808596 - 32808539
Alignment:
Q  325 gaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgaga 382  Q
    ||||||||||||||||||||||||||||| || |||||| |||||| |||||| ||||    
T  32808596 gaaaaagagtgcagaatatatttatttctccctctcaactaaacaaccatcttcgaga 32808539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 3850430 - 3850570
Alignment:
Q  13 tctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaag 112  Q
    |||||| |||| ||||||  | |||||||||||| |||||  |||||||||||||||||| || |||| |||| ||||||     ||||||||| | | |    
T  3850430 tctttatattgcaatatagattctatttataggacacaaat-aggtaaatgaataatcacatttcaatccacttactagtg----ggagttacatgcatg 3850524  T
Q  113 tggaaagttaatggatggacatccactaattgatatattcataaca 158  Q
    |||||  ||||||||||| ||||| ||||||  |||||||||||||    
T  3850525 tggaagattaatggatggtcatccgctaatttttatattcataaca 3850570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 18535263 - 18535371
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatca 373  Q
    ||||| |||||| ||| | ||||||||| |||||||||||||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||    
T  18535263 tcgttaaaaaccttaccaggaaaactcaatgggacaaaaccatggttaagggaaaaagagtgcagaacacatttatgtctccccctcataaagacaatca 18535362  T
Q  374 tctttgaga 382  Q
    ||| |||||    
T  18535363 tctatgaga 18535371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 541
Target Start/End: Complemental strand, 14604715 - 14604645
Alignment:
Q  471 aagatcatatgtgaaaaagaactttgaaaaacatgcttttgttctatctagcttaatgtatcatcctttca 541  Q
    ||||||||||| ||||||  ||||||||||| || ||||||||| ||||  ||||||||| ||||||||||    
T  14604715 aagatcatatgagaaaaaagactttgaaaaatattcttttgttccatctcccttaatgtaccatcctttca 14604645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 31093231 - 31093339
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatca 373  Q
    ||||| |||||| ||| | |||||| || |||||||||||||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||    
T  31093231 tcgttaaaaaccttaccaggaaaacccaatgggacaaaaccatggttaagggaaaaagagtgcagaacacatttatgtctccccctcataaagacaatca 31093330  T
Q  374 tctttgaga 382  Q
    ||| |||||    
T  31093331 tctatgaga 31093339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 37357013 - 37357121
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatca 373  Q
    ||||| |||||| ||| | |||||| || |||||||||||||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||    
T  37357013 tcgttaaaaaccttaccaggaaaacccaatgggacaaaaccatggttaagggaaaaagagtgcagaagacatttatgtctccccctcataaagacaatca 37357112  T
Q  374 tctttgaga 382  Q
    ||| |||||    
T  37357113 tctatgaga 37357121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 26028545 - 26028499
Alignment:
Q  294 aaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaa 340  Q
    |||||||||||||| ||||||||||| ||  ||||||||||||||||    
T  26028545 aaaactcagtgggataaaaccatagttaagggaaaaagagtgcagaa 26028499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 27417733 - 27417802
Alignment:
Q  280 aaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttat 349  Q
    |||||| ||| | |||||||| | ||||||||||||| || ||  ||||||||||||| |||||||||||    
T  27417733 aaaaccttactaggaaaactcggcgggacaaaaccatggtgaagggaaaaagagtgcaaaatatatttat 27417802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 28519134 - 28519066
Alignment:
Q  293 gaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctca 361  Q
    |||||| || ||||| |||||| | || || ||||||||||||||||| | |||||||||| |||||||    
T  28519134 gaaaacccaatgggataaaaccttggtgaagagaaaaagagtgcagaacacatttatttctccccctca 28519066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 293 - 389
Target Start/End: Original strand, 8049264 - 8049360
Alignment:
Q  293 gaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgagatgatgaa 389  Q
    |||||||||||||||||||||||| ||||| | ||| |||||||| ||||||||||| ||| |||||||| ||| |||||||||  |||| ||||||    
T  8049264 gaaaactcagtgggacaaaaccatggtaaagaaaaatagagtgcaaaatatatttatatctccccctcaatcaatcaatcatctcagagacgatgaa 8049360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 5998200 - 5998125
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttat 349  Q
    ||||| |||||| ||| ||||||||||| ||||| |||||||| || |||||||||||| ||||||| | ||||||    
T  5998200 tcgttaaaaaccttactaagaaaactcaatgggataaaaccattgttaaaagaaaaagattgcagaagacatttat 5998125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 8049036 - 8049132
Alignment:
Q  58 taaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataac 157  Q
    |||||||||||| || ||||||| ||||||||||| ||    ||||| ||||| |||||| ||||||| ||| ||||  || ||||||||||||||||||    
T  8049036 taaatgaataatgacattacaattcactcactagtgag----agttataagtatgtggaaggttaatgaatgaacatttacaaattgatatattcataac 8049131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 340577 - 340685
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatca 373  Q
    ||||| |||||| ||| | |||||| || |||||||||||||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||    
T  340577 tcgttaaaaaccttaccaggaaaacccaatgggacaaaaccatggttaagggaaaaagagtgcagaacacatttatgtctccccctcataaagacaatca 340676  T
Q  374 tctttgaga 382  Q
    ||| |||||    
T  340677 tctatgaga 340685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 14997768 - 14997830
Alignment:
Q  326 aaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgagatgatgaa 389  Q
    |||||||||||| |||||||| || ||| |||||||| |||| |||||||| ||||||||||||    
T  14997768 aaaaagagtgcaaaatatattcatatctccccctcaatcaaa-aatcatctctgagatgatgaa 14997830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 389
Target Start/End: Complemental strand, 20362482 - 20362419
Alignment:
Q  326 aaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgagatgatgaa 389  Q
    |||||||||||| ||||||||||| | | |||||||| ||||||||||| | ||||| ||||||    
T  20362482 aaaaagagtgcaaaatatatttatatttccccctcaatcaaacaatcatttatgagaggatgaa 20362419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 34322413 - 34322347
Alignment:
Q  93 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataacat 159  Q
    |||| ||||||||||| | |||||||| | || ||| |||||||||||||  |||||||||||||||    
T  34322413 tagtgggagttacaagcatgtggaaaggttatagatagacatccactaatatatatattcataacat 34322347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 34326362 - 34326296
Alignment:
Q  92 ttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 158  Q
    ||||| ||||||||||| | |||||| | | || |||||||||||||||||  ||||||||||||||    
T  34326362 ttagtgggagttacaagcatgtggaagggttatagatggacatccactaatatatatattcataaca 34326296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 382
Target Start/End: Complemental strand, 8247966 - 8247877
Alignment:
Q  293 gaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgaga 382  Q
    |||||| || |||||||||||||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||||| |||||    
T  8247966 gaaaacccaatgggacaaaaccatggttaagggaaaaagagtgcagaacacatttatgtctccccctcataaagacaatcatctatgaga 8247877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 19203726 - 19203797
Alignment:
Q  13 tctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcact 85  Q
    |||||| |||||||||||  |||| ||||| ||| |||||  |||||||||||||||||| ||||||| ||||    
T  19203726 tctttatattgtaatatagatcctgtttattggacacaaat-aggtaaatgaataatcacattacaatccact 19203797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 18845665 - 18845568
Alignment:
Q  57 gtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataa 156  Q
    |||||||||||||||| ||||||| |||| ||||||     ||||||||||| | |||||| ||||||| ||||||||||||||||| ||||||||||||    
T  18845665 gtaaatgaataatcacattacaatccacttactagtg----ggagttacaagcatgtggaaggttaatgaatggacatccactaattaatatattcataa 18845570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 26539006 - 26539148
Alignment:
Q  240 aagggaaaagagtataatatccgatgtatctttttcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcaga 339  Q
    |||| ||||||||| ||||||| || ||| | | ||||| |||||| ||| | |||||| || ||  |||||||||| || ||  |||||| ||||||      
T  26539006 aaggaaaaagagtacaatatccaatatatatgtctcgttaaaaaccttactaggaaaacccactgatacaaaaccatggtgaagggaaaaatagtgcaag 26539105  T
Q  340 atatatttatttctgcccctcaaccaaacaatcatctttgaga 382  Q
    |||||||||| ||| | ||||| ||||||||||||||||||||    
T  26539106 atatatttatatctcctcctcatccaaacaatcatctttgaga 26539148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 389
Target Start/End: Complemental strand, 13494908 - 13494812
Alignment:
Q  293 gaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgagatgatgaa 389  Q
    |||| |||||||| |||||||||| || || | ||| |||||||||||||||||||| |||  || ||| ||||||||||||||   ||||||||||    
T  13494908 gaaacctcagtggaacaaaaccatggtgaagaaaaatagagtgcagaatatatttatatctctccttcatccaaacaatcatctccaagatgatgaa 13494812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 629
Target Start/End: Complemental strand, 16423124 - 16423041
Alignment:
Q  543 tatgagcaacacacaaataacttccatatcaattataacaaagtaacaaataatatatcataataacatgagtaattagcaaggtac 629  Q
    |||||||| |||||||||||| | ||| || | ||||||||||||| ||||||||||||   |||||||||||| ||| ||||||||    
T  16423124 tatgagcatcacacaaataacctgcatttctaatataacaaagtaataaataatatatc---ataacatgagtagttaacaaggtac 16423041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 274 - 361
Target Start/End: Original strand, 43287673 - 43287760
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctca 361  Q
    ||||| |||||| ||| | ||||||||| |||||||||||||| || ||  |||||||||||||||| | |||||| ||| |||||||    
T  43287673 tcgttaaaaaccttaccaggaaaactcaatgggacaaaaccatggttaagggaaaaagagtgcagaacacatttatgtctccccctca 43287760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 16243187 - 16243286
Alignment:
Q  55 aggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcat 154  Q
    ||||||| |||||||||| || |||| |||| ||||||     ||||||||| ||| || ||| ||||||| ||||||||||| ||||| ||||||||||    
T  16243187 aggtaaaagaataatcacatttcaatccacttactagtg----ggagttacatgtatgtagaaggttaatgaatggacatccattaatttatatattcat 16243282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 342 - 380
Target Start/End: Original strand, 9070603 - 9070641
Alignment:
Q  342 atatttatttctgcccctcaaccaaacaatcatctttga 380  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  9070603 atatttatttctccccctcaaccaaacaatcatttttga 9070641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 16423674 - 16423575
Alignment:
Q  55 aggtaaatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcat 154  Q
    ||||||| |||||||||| || |||| |||| ||||||     |||||| || ||| || ||| ||||||||||||||||||| || || ||||||||||    
T  16423674 aggtaaaagaataatcacatttcaatccacttactagtg----ggagttgcatgtatgtagaaggttaatggatggacatccaatagtttatatattcat 16423579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 17842863 - 17842813
Alignment:
Q  339 aatatatttatttctgcccctcaaccaaacaatcatctttgagatgatgaa 389  Q
    ||||||||||||||| || ||||||||||||||||||| ||| | ||||||    
T  17842863 aatatatttatttctccctctcaaccaaacaatcatctctgatacgatgaa 17842813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 18557638 - 18557704
Alignment:
Q  93 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataacat 159  Q
    |||| ||||||| ||||| |||||| |||||  | || |||||||||| ||||||||||||||||||    
T  18557638 tagtgggagttataagtatgtggaaggttaaaagttgaacatccactacttgatatattcataacat 18557704  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 18845469 - 18845527
Alignment:
Q  99 gagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataac 157  Q
    |||||||||||   ||||| ||||||  ||| |||||||||||||||||||||||||||    
T  18845469 gagttacaagtctatggaaggttaataaatgaacatccactaattgatatattcataac 18845527  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 15636386 - 15636451
Alignment:
Q  93 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 158  Q
    |||| ||||||||||||| |||||  | ||||||||||||||||||||||||||||| ||||||||    
T  15636386 tagtgggagttacaagtatgtggaggggtaatggatggacatccactaattgatataatcataaca 15636451  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 10937156 - 10937061
Alignment:
Q  294 aaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgagatgatgaa 389  Q
    ||||| || |||||||||||||| || ||  ||| ||||||||| ||||||||||| ||| |||||||| |||||| |||||| ||||| ||||||    
T  10937156 aaaacccattgggacaaaaccatggtgaagggaagaagagtgcaaaatatatttatatctccccctcaatcaaacattcatctctgagacgatgaa 10937061  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 382
Target Start/End: Complemental strand, 21883299 - 21883191
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatca 373  Q
    ||||| |||||| ||| |||||||| || |||||||||||||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||    
T  21883299 tcgttaaaaaccttaccaagaaaacccaatgggacaaaaccatggttaagggaaaaagagtgcagaacacatttatgtctccccctcataaagacaatca 21883200  T
Q  374 tctttgaga 382  Q
    ||| |||||    
T  21883199 tctatgaga 21883191  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 605
Target Start/End: Complemental strand, 10936782 - 10936720
Alignment:
Q  543 tatgagcaacacacaaataacttccatatcaattataacaaagtaacaaataatatatcataa 605  Q
    |||||||| |||||||||||| | ||| || | ||||| ||||||||||||||||||||||||    
T  10936782 tatgagcatcacacaaataacctgcatttctaatataataaagtaacaaataatatatcataa 10936720  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 49487008 - 49487116
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatca 373  Q
    ||||| |||||| ||| | |||||| || |||||||||||||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||    
T  49487008 tcgttaaaaaccttaccaggaaaacccaatgggacaaaaccatggttaagggaaaaagagtgcagaacacatttatgtctacccctcataaagacaatca 49487107  T
Q  374 tctttgaga 382  Q
    ||| |||||    
T  49487108 tctatgaga 49487116  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 11713364 - 11713277
Alignment:
Q  60 aatgaataatcacgttacaatgcactcactagttagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatatt 151  Q
    ||||||||||||| ||| ||| ||||||    ||||| ||||||| |||||  ||||| |||||| ||||||||||||||||||||||||||    
T  11713364 aatgaataatcacattagaatccactca----ttagtgggagttataagtatctggaaggttaatagatggacatccactaattgatatatt 11713277  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 274 - 385
Target Start/End: Complemental strand, 16673384 - 16673273
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatca 373  Q
    ||||| |||||| ||| | |||||| || |||||||||||||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||    
T  16673384 tcgttaaaaaccttaccaggaaaacccaatgggacaaaaccatggttaagggaaaaagagtgcagaacacatttatgtctccccctcataaagacaatca 16673285  T
Q  374 tctttgagatga 385  Q
    ||| ||||||||    
T  16673284 tctatgagatga 16673273  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 35264824 - 35264932
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatca 373  Q
    ||||| |||||| ||| | |||||| || |||||||||||||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||    
T  35264824 tcgttaaaaaccttaccaggaaaacccaatgggacaaaaccatggttaagggaaaaagagtgcagaacacatttatgtctccccctcataaagacaatca 35264923  T
Q  374 tctttgaga 382  Q
    ||| |||||    
T  35264924 tctatgaga 35264932  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 18080079 - 18080140
Alignment:
Q  126 gatggacatccactaattgatatattcataacattcttctatagatgtccatctaagatatg 187  Q
    |||||||||||||||||  |||||||||||||||||| |  | |||||||||| | ||||||    
T  18080079 gatggacatccactaatatatatattcataacattctcccttggatgtccatcaaggatatg 18080140  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 382
Target Start/End: Original strand, 21171490 - 21171578
Alignment:
Q  294 aaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgaga 382  Q
    ||||| || |||||||||||||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||||| |||||    
T  21171490 aaaacccaatgggacaaaaccatggttaagggaaaaagagtgcagaacacatttatgtctccccctcataaagacaatcatctatgaga 21171578  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 23053662 - 23053770
Alignment:
Q  274 tcgtttaaaaccctacaaagaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatca 373  Q
    ||||| |||||| ||| | |||||| || |||||||||||||| || ||   ||||||||||||||| | |||||| ||| |||||||   | |||||||    
T  23053662 tcgttaaaaaccttaccaggaaaacccaatgggacaaaaccatggttaaggcaaaaagagtgcagaacacatttatgtctccccctcataaagacaatca 23053761  T
Q  374 tctttgaga 382  Q
    ||| |||||    
T  23053762 tctatgaga 23053770  T

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Target: scaffold1457 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold1457
Description:

Target: scaffold1457; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 541
Target Start/End: Original strand, 1474 - 1544
Alignment:
Q  471 aagatcatatgtgaaaaagaactttgaaaaacatgcttttgttctatctagcttaatgtatcatcctttca 541  Q
    |||||| | ||||||||||||||||| ||||||| ||||| ||| ||||  ||||||||| ||||||||||    
T  1474 aagatcgtctgtgaaaaagaactttgcaaaacattcttttcttccatctcccttaatgtaccatcctttca 1544  T

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Target: scaffold1457; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 382
Target Start/End: Original strand, 1203 - 1352
Alignment:
Q  232 tcctaatgaagggaaaagagtataatatccgatgtatctttttcgtttaaaaccctacaaagaaaactcagtgggacaaaacca-tagtaaaaagaaaaa 330  Q
    ||||| ||| || ||||||||| ||||||||||  |||||  ||||| |||||| |||  | |||||||| ||||| |||| || | |||||   |||||    
T  1203 tcctagtgagggaaaaagagtacaatatccgat--atcttcctcgttaaaaaccttaccgaaaaaactcaatgggataaaatcaatggtaaaggaaaaaa 1300  T
Q  331 gagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgaga 382  Q
    || |||||||||||||||||| |  |||||||| ||||||||| || |||||    
T  1301 gattgcagaatatatttatttatttccctcaactaaacaatcacctatgaga 1352  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 22274791 - 22274726
Alignment:
Q  93 tagtaggagttacaagtaagtggaaagttaatggatggacatccactaattgatatattcataaca 158  Q
    |||| ||||||||||| | |||||| | | || |||||||||||||||||  ||||||||||||||    
T  22274791 tagtgggagttacaagcatgtggaaggattatagatggacatccactaatatatatattcataaca 22274726  T

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Target: scaffold0102 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 13881 - 13814
Alignment:
Q  293 gaaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctca 361  Q
    |||||| || |||||||||||||| || ||  |||||||||||||||| | |||||||||| |||||||    
T  13881 gaaaacccaatgggacaaaaccatggttaag-gaaaaagagtgcagaacacatttatttctccccctca 13814  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 382
Target Start/End: Complemental strand, 111730 - 111642
Alignment:
Q  294 aaaactcagtgggacaaaaccatagtaaaaagaaaaagagtgcagaatatatttatttctgcccctcaaccaaacaatcatctttgaga 382  Q
    ||||| || |||||||||||||| || ||  |||||||||||||||| | |||||| ||| |||||||   | |||||||||| |||||    
T  111730 aaaacccaatgggacaaaaccatggttaagggaaaaagagtgcagaacacatttatgtctccccctcataaagacaatcatctatgaga 111642  T

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