View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8440_high_6 (Length: 409)
Name: NF8440_high_6
Description: NF8440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8440_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 3 - 394
Target Start/End: Original strand, 40888739 - 40889130
Alignment:
| Q |
3 |
attgttaataattcttgtagatagtatgcaaggaatgtatatttagaaaagagaaaacggaataggctgatagttattcccctgtataaaaaactatatt |
102 |
Q |
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| T |
40888739 |
attgttaataattcttgtagatagtatgcaaggaatgtatatttagaaaagagaaaacggaataggctgatagttattcccctgaataaaaaactatatt |
40888838 |
T |
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| Q |
103 |
taagaatatgaaaattagatcagactggattagtctgactggtcaaactgtgaaccatttcattgggtggttccgtctaagtgtttaacttctctaaccg |
202 |
Q |
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| T |
40888839 |
taagaatatgaaaattagatcagactggattagtctgactggtcaaactgtgaaccatttcattgggtggttccgtctaagtgtttaacttctctaaccg |
40888938 |
T |
|
| Q |
203 |
gtaatttaaaaatcagttattgaaccaccgcactggttgcaaactgtcttgatttgagtggagtggacctgtctaatgactagttaaagctttattaaac |
302 |
Q |
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| T |
40888939 |
gtaatttaaaaatcagttattgaaccaccgcactggttgcaaactgtcttgatttgagtggagtggacctgtttgatgactagttaaagctttattaaac |
40889038 |
T |
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| Q |
303 |
caaaatacaatttcttcgttgagcattgaaccatggttgttaaggaggattcagatctgctttcttattcacttgtctcttctcttgttttt |
394 |
Q |
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| T |
40889039 |
caaaatacaatttcttcgttgagcattgaaccatggttgttaaggaggattcagatctgctttcttattcacatgtctcctctcttgttttt |
40889130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 3 - 394
Target Start/End: Original strand, 44139969 - 44140360
Alignment:
| Q |
3 |
attgttaataattcttgtagatagtatgcaaggaatgtatatttagaaaagagaaaacggaataggctgatagttattcccctgtataaaaaactatatt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44139969 |
attgttaataattcttgtagatagtatgcaaggaatgtatatttagaaaagagaaaacggaataggctgatagttattcccctgaataaaaaactatatt |
44140068 |
T |
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| Q |
103 |
taagaatatgaaaattagatcagactggattagtctgactggtcaaactgtgaaccatttcattgggtggttccgtctaagtgtttaacttctctaaccg |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
44140069 |
taagaatatgaaaattagatcagactggattagtctgactggtcaaactgtgaaccatttcattgggtggttcagtctaagtctttaacttctctaaccg |
44140168 |
T |
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| Q |
203 |
gtaatttaaaaatcagttattgaaccaccgcactggttgcaaactgtcttgatttgagtggagtggacctgtctaatgactagttaaagctttattaaac |
302 |
Q |
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| T |
44140169 |
gtaatttaaaaatcagttattgaaccaccgcactggttgcaaactgtcttgatttgagtggagtggacctgtttgatgactagttaaagctttattaaac |
44140268 |
T |
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| Q |
303 |
caaaatacaatttcttcgttgagcattgaaccatggttgttaaggaggattcagatctgctttcttattcacttgtctcttctcttgttttt |
394 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
44140269 |
caaaatacaatttctttgttgagtattgaaccatggttgttaaggaggattcagatctgctttcttattcacgtgtctcctctcttgttttt |
44140360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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