View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8440_high_7 (Length: 406)
Name: NF8440_high_7
Description: NF8440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8440_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 29 - 391
Target Start/End: Original strand, 47118442 - 47118804
Alignment:
| Q |
29 |
catttgcaaaacaagaactcactctttctctctcacccttccaaattccacttcctaccatgcacaaaggcaagttcaagcttccacctccagacaagcc |
128 |
Q |
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| T |
47118442 |
catttgcaaaacaagaactcactctttctctctcacccttccaaattccacttcctaccatgcacaaaggcaagttcaagcttccacctccagacaagcc |
47118541 |
T |
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| Q |
129 |
tggaaggttcatctttcctgatagccttggaagcttggtgatgatcactggattggatgaaaagggaaatgaagtcgagagttcggaatttgaagttgag |
228 |
Q |
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| T |
47118542 |
tggaaggttcatatttcctgatagccttggaagcttggtgatgatcactggattggatgaaaagggaaatgaagtcgagagttcggaatttgaagttgag |
47118641 |
T |
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| Q |
229 |
tccggtgaagagctggaatcgattaaacctggcgcgttagggtttcacaaagagagtgatggtggtgatgaagctatggatgaggaaaaagatgagagtg |
328 |
Q |
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| T |
47118642 |
tccggtgaagagctggaatcgattaaacctggcgcgttagggtttcacaaagagagtgatggtggtgatgaagctatggatgaggaaaaagatgagagtg |
47118741 |
T |
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| Q |
329 |
atcaaagaattaggaagaagatgaataaagaggttgttgcaacttcggtttcgctgttgaaat |
391 |
Q |
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| T |
47118742 |
atcaaagaattaggaagaagatgaataaagaggttgttgcaacttcggtttcgctgttgaaat |
47118804 |
T |
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