View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8440_high_8 (Length: 384)
Name: NF8440_high_8
Description: NF8440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8440_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 58 - 369
Target Start/End: Original strand, 41926205 - 41926518
Alignment:
| Q |
58 |
aaatcaaaacgatgtcacaatttcttatcatgcgtcaggttcaatgatattaacgttacaatttagtaaggtaaacacaataagtatattaacataatat |
157 |
Q |
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| T |
41926205 |
aaatcaaaacgatgtcacaatttcttatcatgcgtcaggttcaatgatattaacgttacaatttagtaaggtaaacacaattagtatatcaacataatat |
41926304 |
T |
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| Q |
158 |
ggctcccaaattgataaaaatcataacattccaatagtttgtatattgtatcttttgttgctgaagggtctccggtgccacttacgccagtcttgtcgag |
257 |
Q |
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| T |
41926305 |
ggctcccaaattgataaaaatcataacattccaatagtgtgtatattgtatcttttgttgcagaagggtctccagtgccacttacgccagtcttgtcgag |
41926404 |
T |
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| Q |
258 |
acttcnnnnnnnnnacggtttgtagaaacttttgttattcatcaattttcagtcattaatgtgcagtttcattttcc--tagtatttaccattgcaataa |
355 |
Q |
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| T |
41926405 |
acttctttttttttacggtttgtagaaacttttgttattcatcaattttcagtcattaatgtgcagtttcattttcctatagtatttaccattgcaataa |
41926504 |
T |
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| Q |
356 |
atcatggaaaatca |
369 |
Q |
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| T |
41926505 |
atcatggaaaatca |
41926518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41925192 - 41925249
Alignment:
| Q |
1 |
aatggaattgggaaaaacggaagggtaacagaagctgagaatctgtttctccatatga |
58 |
Q |
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| T |
41925192 |
aatggaattgggaaaaacggaagggtaacagaagctgagaatctgtttctccatatga |
41925249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 36123409 - 36123358
Alignment:
| Q |
145 |
attaacataatatggctcccaaattgataaaaatcataacattccaatagttt |
197 |
Q |
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| T |
36123409 |
attaacata-taaggctcccaaattgacaaaaatcataatattccaatagttt |
36123358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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