View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8440_low_13 (Length: 380)
Name: NF8440_low_13
Description: NF8440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8440_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 26271293 - 26271636
Alignment:
| Q |
18 |
tttataaactatcttaaatatttagcttcttcatatgaattactaattaatttgcaaaatggtggaacagggattgggagaaacctttggacgtgtgaca |
117 |
Q |
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| T |
26271293 |
tttataaactatcttaaatatttagcttcttcatatgaattactaatt----tgcaaaatggtg-aacagggattgggagaaacctttggacgtgtgaca |
26271387 |
T |
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| Q |
118 |
atagaagcaatggcatttggtcttccggttctaggaacagatggtgggggaacaaaggaaattgtggagcataatgtgagtggtcttcttcatcctatta |
217 |
Q |
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| T |
26271388 |
atagaagcaatggcatttggtcttccggttctaggaacagatggtgggggaacaaaggaaattgtggagcataatgtgagtggtcttcttcatcctatta |
26271487 |
T |
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| Q |
218 |
gacgtaaagggaatcatgttcttgctcaaaatcttgagtttttacttgaaaaccgattggcaagagaacaaatgggaatgtatggaagaaagaaggtgca |
317 |
Q |
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| T |
26271488 |
gacgtaaagggaatcatgtccttgctcaaaatcttgagtttttacttgaaaaccgattggcaagagaacaaatgggaatgtatggaagaaagaaggtgca |
26271587 |
T |
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| Q |
318 |
aaggatgtatttaaaggagcatatgtatagtaaatttgtagaggttctt |
366 |
Q |
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| T |
26271588 |
aaggatgtatttgaaggagcacatgtatagtaaatttgtagaggttctt |
26271636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 85 - 366
Target Start/End: Complemental strand, 3110430 - 3110149
Alignment:
| Q |
85 |
cagggattgggagaaacctttggacgtgtgacaatagaagcaatggcatttggtcttccggttctaggaacagatggtgggggaacaaaggaaattgtgg |
184 |
Q |
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| T |
3110430 |
cagggattgggagaaacctttggacgtgtgacgatagaagcaatggcatttggtcttccggttctaggaacagatggtggggggacaaaggaaattgtgg |
3110331 |
T |
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| Q |
185 |
agcataatgtgagtggtcttcttcatcctattagacgtaaagggaatcatgttcttgctcaaaatcttgagtttttacttgaaaaccgattggcaagaga |
284 |
Q |
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| T |
3110330 |
agcataatgtgagtggtcttcttcatcctattagacgtaaagggaatcatgttcttgctcaaaatcttgagtttttacttgaaaaccgattggcaagaga |
3110231 |
T |
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| Q |
285 |
acaaatgggaatgtatggaagaaagaaggtgcaaaggatgtatttaaaggagcatatgtatagtaaatttgtagaggttctt |
366 |
Q |
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| T |
3110230 |
acaaatgggaatgaatggaagaaagaaggtgcaaaggatgtatttgaaggagcacatgtatagtaaatttgtagaggttctt |
3110149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 44064202 - 44064266
Alignment:
| Q |
82 |
gaacagggattgggagaaacctttggacgtgtgacaatagaagcaatggcatttggtcttccggt |
146 |
Q |
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| T |
44064202 |
gaacagggacttggagagacatttggacgggtgactatagaagcaatggcatttggtcttccggt |
44064266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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