View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8440_low_14 (Length: 308)
Name: NF8440_low_14
Description: NF8440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8440_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 30472383 - 30472263
Alignment:
| Q |
16 |
aagcagagaccaacaacacaaaaacaagtaaaaggtgacgtagataggcggaacacccaacagaaaatccatacacttcggacatcaaatcaccgacaaa |
115 |
Q |
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| T |
30472383 |
aagcagagaccaacaacacaaaaacaagtaaaaggtgacgtagataggcggaacacccaacagaaaatccatacacttcggacatcaaatcaccgacaaa |
30472284 |
T |
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| Q |
116 |
aatatcactcaactgaaggtt |
136 |
Q |
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| T |
30472283 |
aatatcactcaactcaaggtt |
30472263 |
T |
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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 30472171 - 30472114
Alignment:
| Q |
228 |
gtgagccaaatcttcaacctccattgcaaatctccaaacgagatccaaacacttatct |
285 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30472171 |
gtgagccaaatcttcaaccaccattgcaaatctccaaacgagatccaaacacttatct |
30472114 |
T |
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