View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8440_low_2 (Length: 684)
Name: NF8440_low_2
Description: NF8440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8440_low_2 |
 | |
|
| [»] scaffold0608 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 14 - 666
Target Start/End: Original strand, 46925829 - 46926495
Alignment:
| Q |
14 |
gcagagacatttgatgtgttaggacgcgagttcgaacctaaaatttaatcatggcagtgaggatatttatttaaaagaaaaagatataaagaaaacaagt |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46925829 |
gcagagacatttgatgtgttaggacgtgagttcgaacctaaaatttaatcatggcagtgaggatatttatttaaaagaaaaagatagaaagaaaacaagt |
46925928 |
T |
|
| Q |
114 |
aaatgattcggggactttatttgctgaagtga-----------------cttaaagaatttactagaagactcagtctattcacatatatgtagtatatg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46925929 |
aaatgattcggggactttatttgctgaagtgatttaggttttgaattggcttaaagaatttactagaagactcagtctattcacatatatgtagtatatg |
46926028 |
T |
|
| Q |
197 |
tttttctttcttcaaaatagtcaacattaatttgatttgaacctacattgtggaagtttatgccaaaattagatcattaaactaatattaattcaacttg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46926029 |
tttttctttcttcaaaatagtcaacattaatttgatttgaacctacattgtggaagtttatgccaaaattagatcattaaactaatattaattcaacttg |
46926128 |
T |
|
| Q |
297 |
tgtatgaaggatcatgtataaattgggttgcaggcaaaggagagatgcatcaacacaatattcactcacattgagatcatcattttcaagaaacaatgga |
396 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46926129 |
tgtatgaaggatcatgtataaa---ggttgcaggcaaaggagagatgcatcaacacaatattcactcacattgagatcatcattttcaagaaacaatgga |
46926225 |
T |
|
| Q |
397 |
ctttgtaagttgtactcttgtttttctgttaacatgcttatccattcatgctctttgttcactccttactaaaataactaaaccaaactataagcttcca |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46926226 |
ctttgtaagttgtactcttgtttttctgttaacatgcttatccattcatgctctttattcactccttactagaataactaaaccaaactataagcttcca |
46926325 |
T |
|
| Q |
497 |
ccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctagcaaaaattcatggccctttaa |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46926326 |
ccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctagcgaaaattcatggccctttaa |
46926425 |
T |
|
| Q |
597 |
tgagtctcaagtttggccaaataaccactattgttatctcctcagcaacaatggctaaagaggttctcct |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46926426 |
tgagtctcaagtttggccaaataaccactattgttatctcctcagcaacaatggctaaagaggttctcct |
46926495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 404 - 651
Target Start/End: Complemental strand, 11107825 - 11107578
Alignment:
| Q |
404 |
agttgtactcttgtttttctgttaacatgcttatccattcatgctctttgttcactccttactaaaataactaaaccaaactataagcttccaccaggac |
503 |
Q |
| |
|
|||||||| |||||| || |||||||||| || |||||||| | |||| | ||| |||| | || ||| ||||||| |||||||||||||||||||| |
|
|
| T |
11107825 |
agttgtacacttgttcttgtgttaacatgtgcattcattcatgttttttgcttactacttaaaagaacaacaaaaccaacctataagcttccaccaggac |
11107726 |
T |
|
| Q |
504 |
cttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctagcaaaaattcatggccctttaatgagtct |
603 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||| || ||||| |||||||| || || || ||||| |||| |||||||||||||| |
|
|
| T |
11107725 |
cttcccctcttcccatcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaacttgccaaaatatatggtcctttaatgagtct |
11107626 |
T |
|
| Q |
604 |
caagtttggccaaataaccactattgttatctcctcagcaacaatggc |
651 |
Q |
| |
|
|||| | || |||||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
11107625 |
caagctagggcaaataaccactgttgttatctcttcatcaacaatggc |
11107578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 476 - 642
Target Start/End: Original strand, 46933170 - 46933336
Alignment:
| Q |
476 |
aaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctag |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| || |
|
|
| T |
46933170 |
aaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatctta |
46933269 |
T |
|
| Q |
576 |
caaaaattcatggccctttaatgagtctcaagtttggccaaataaccactattgttatctcctcagc |
642 |
Q |
| |
|
|||| |||||||| || |||| |||||||||||||||| |||||||||| | || |||||||||| |
|
|
| T |
46933270 |
caaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagc |
46933336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 11108002 - 11107962
Alignment:
| Q |
279 |
taatattaattcaacttgtgtatgaaggatcatgtataaat |
319 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
11108002 |
taattttaattcaacttgtgtttgagggatcatgtataaat |
11107962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 404 - 651
Target Start/End: Complemental strand, 3264 - 3017
Alignment:
| Q |
404 |
agttgtactcttgtttttctgttaacatgcttatccattcatgctctttgttcactccttactaaaataactaaaccaaactataagcttccaccaggac |
503 |
Q |
| |
|
|||||||| |||||| || |||||||||| || |||||||| | |||| | ||| |||| | || ||| ||||||| |||||||||||||||||||| |
|
|
| T |
3264 |
agttgtacacttgttcttgtgttaacatgtgcattcattcatgttttttgcttactacttaaaagaacaacaaaaccaacctataagcttccaccaggac |
3165 |
T |
|
| Q |
504 |
cttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctagcaaaaattcatggccctttaatgagtct |
603 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||| || ||||| |||||||| || || || ||||| |||| |||||||||||||| |
|
|
| T |
3164 |
cttcccctcttcccatcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaacttgccaaaatatatggtcctttaatgagtct |
3065 |
T |
|
| Q |
604 |
caagtttggccaaataaccactattgttatctcctcagcaacaatggc |
651 |
Q |
| |
|
|||| | || |||||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
3064 |
caagctagggcaaataaccactgttgttatctcttcatcaacaatggc |
3017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 3441 - 3401
Alignment:
| Q |
279 |
taatattaattcaacttgtgtatgaaggatcatgtataaat |
319 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
3441 |
taattttaattcaacttgtgtttgagggatcatgtataaat |
3401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 558
Target Start/End: Complemental strand, 29975458 - 29975388
Alignment:
| Q |
488 |
aagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaa |
558 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
29975458 |
aagcttccaccaggacctactcctcttcccttcataggaaacctccttcaattagggaaaaaacctcacaa |
29975388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University