View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8440_low_4 (Length: 610)
Name: NF8440_low_4
Description: NF8440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8440_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 155; Significance: 6e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 23469161 - 23468966
Alignment:
| Q |
20 |
aaagtcaactctctttgataatttacacttaatcaagcagccaaatggaatgaagcaaaaccactctgttggcaatatatttttgctaagatgcgatgtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23469161 |
aaagtcaactctctttgataatttacacttaatcaagcagccaaatgtaatgaagcaaaaccatattgttggcaatatatttttgctaagatgcgatgtg |
23469062 |
T |
|
| Q |
120 |
agcagcaataaatcgttcacatggcatccaaaaggtgatgaaaacttgactttatttattgagtatatccagttttttgggattaattgaaattccttga |
219 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23469061 |
agcagctataaattgttcacatggcatccaaaaggtgatgaaaacttgactt----tattgagtatatccagtttgttgggattaattgaaattccttga |
23468966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 500 - 605
Target Start/End: Complemental strand, 21656866 - 21656761
Alignment:
| Q |
500 |
actagaactacacccgtgcgatgcatgggtctatttagctataactatgacattgaaatatagtaaataatataggaaaattacataagttgatagaata |
599 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21656866 |
actagaacaacacccgtgcgatgcacgggtctatttagctataactatgacattgaaatatagtaaataatataggaaaattacataagttgatagaata |
21656767 |
T |
|
| Q |
600 |
atgtac |
605 |
Q |
| |
|
|||||| |
|
|
| T |
21656766 |
atgtac |
21656761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University