View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8440_low_5 (Length: 534)
Name: NF8440_low_5
Description: NF8440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8440_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 11 - 485
Target Start/End: Complemental strand, 27775354 - 27774880
Alignment:
| Q |
11 |
cattattctatcgggcaaatgttatttcagcatatgagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgatt |
110 |
Q |
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| T |
27775354 |
cattattctatcgggcaaatgttattccagcatatgagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgatt |
27775255 |
T |
|
| Q |
111 |
agagataataattgtgatggatatagatgcaattaattctaaaataacaaactaaactttcaagacaaaacataaaaggtgggagacaatacatgtttaa |
210 |
Q |
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| T |
27775254 |
agagataataattgtgatggatatagatgcaattaattctaaaataacaaactaaactttaaagacaaaacataaaaggtgggagacaatacatgtttaa |
27775155 |
T |
|
| Q |
211 |
gctgcagaagaattgctgcttttttgccttccaataaagttgtgatggcatttatcttccttatatgttcagcaagagctcccatagctgaagttccatg |
310 |
Q |
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| T |
27775154 |
gctgcagaagaattgttgcttttttgccttccaataaagttgtgatggcatttatcttccttatatgttcagcaagagctcccatagctgaagttccatc |
27775055 |
T |
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| Q |
311 |
tctttttactacaaaaagtgctagttcatgttcgttccatctgcttaatccacgtgccgatttcctcaaagtgtctaccttcgcttttaggaaattggct |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27775054 |
tctttttactacaaaaagtgctagttcatgttcgttccatttgcttaatccacgtgccgatttcctcaaagtgtctaccttcgctttgaggaaattggct |
27774955 |
T |
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| Q |
411 |
cgggaattaagcttatgaaacgagaattatctagcacttcttctgctacaaaggggtgagactgcagctatggga |
485 |
Q |
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| T |
27774954 |
cgggaattaagcttatgaaacgagaattatctagcactttttctgctacaaaggggtgagactgcagctatggga |
27774880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 27764453 - 27764322
Alignment:
| Q |
46 |
gagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgattagagataataattgtgatggatatagatgcaatta |
145 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| || ||||||||| | |
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| T |
27764453 |
gagctcaacggaataggctaaaagattatttcagcatcttgattatttagatgttaagtaagattagagatattaatagtgatgaattgagatgcaatca |
27764354 |
T |
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| Q |
146 |
attctaaaataacaaactaaactttcaagaca |
177 |
Q |
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| T |
27764353 |
attctaaaataccaaaccaaactttcaagaca |
27764322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 277 - 392
Target Start/End: Complemental strand, 27771645 - 27771530
Alignment:
| Q |
277 |
gttcagcaagagctcccatagctgaagttccatgtctttttactacaaaaagtgctagttcatgttcgttccatctgcttaatccacgtgccgatttcct |
376 |
Q |
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|||| |||||||||||||| |||| || ||| ||||| || || | |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
27771645 |
gttccgcaagagctcccatggctgctgtcccacctctttgtaatagagaaagtgctagttcatgttcgttccatctgcttaatccatgtgccaatttcct |
27771546 |
T |
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| Q |
377 |
caaagtgtctaccttc |
392 |
Q |
| |
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|||| | ||||||||| |
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| T |
27771545 |
caaactatctaccttc |
27771530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 27799814 - 27799689
Alignment:
| Q |
65 |
aaaagattatttcagcatcttgattatttagatgt-----taagtatgattagagataataattgtgatggatatagatgcaattaattctaaaataaca |
159 |
Q |
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||||||||| || ||||||||||||||||||||| | ||||||||||||||| |||| | ||| || |||||||||||||||||||||| || |
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| T |
27799814 |
aaaagattagtttagcatcttgattatttagatggagtaattagtatgattagagatgataacagagatagactaagatgcaattaattctaaaatacca |
27799715 |
T |
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| Q |
160 |
aactaaactttcaagacaaaacataa |
185 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
27799714 |
aactaaactttcaagagaaaacataa |
27799689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 394 - 492
Target Start/End: Original strand, 27802129 - 27802226
Alignment:
| Q |
394 |
cttttaggaaattggctcgggaattaagcttatgaaacgagaattatctagcacttcttctgctacaaaggggtgagactgcagctatgggaactcttg |
492 |
Q |
| |
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|||| |||||||||||| |||||||||| |||| ||||||||| | |||||| |||| ||||||||||| |||| |||||||||||||||| |||||| |
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| T |
27802129 |
ctttgaggaaattggcttgggaattaagtgtatggaacgagaatgaactagcatttct-ctgctacaaagaggtgggactgcagctatgggagctcttg |
27802226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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