View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8441_high_13 (Length: 239)

Name: NF8441_high_13
Description: NF8441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8441_high_13
NF8441_high_13
[»] chr3 (13 HSPs)
chr3 (18-239)||(54691996-54692217)
chr3 (124-187)||(6231169-6231232)
chr3 (123-189)||(47149392-47149458)
chr3 (124-189)||(3306518-3306583)
chr3 (122-181)||(890251-890310)
chr3 (127-189)||(51675228-51675290)
chr3 (121-181)||(53590908-53590968)
chr3 (123-189)||(3314403-3314469)
chr3 (122-161)||(23636725-23636764)
chr3 (129-181)||(880953-881004)
chr3 (122-161)||(25635120-25635159)
chr3 (123-161)||(562211-562249)
chr3 (124-161)||(13420690-13420727)
[»] chr1 (13 HSPs)
chr1 (122-238)||(40133656-40133772)
chr1 (122-189)||(50077128-50077195)
chr1 (123-239)||(17318611-17318728)
chr1 (124-234)||(50079272-50079383)
chr1 (122-189)||(50308013-50308079)
chr1 (124-189)||(12302967-12303032)
chr1 (123-162)||(14184109-14184148)
chr1 (122-162)||(31423397-31423437)
chr1 (124-159)||(17352797-17352832)
chr1 (126-168)||(8347787-8347829)
chr1 (122-150)||(8954375-8954403)
chr1 (122-162)||(16430821-16430861)
chr1 (122-162)||(31425499-31425539)
[»] chr7 (10 HSPs)
chr7 (122-239)||(20137552-20137670)
chr7 (124-189)||(4296390-4296455)
chr7 (122-181)||(9680540-9680598)
chr7 (124-189)||(42222888-42222952)
chr7 (124-181)||(11355010-11355066)
chr7 (124-181)||(24817852-24817909)
chr7 (124-187)||(9678864-9678926)
chr7 (122-160)||(24815587-24815625)
chr7 (124-156)||(22829139-22829171)
chr7 (124-156)||(39146492-39146524)
[»] chr5 (6 HSPs)
chr5 (124-239)||(36208298-36208414)
chr5 (124-234)||(1190043-1190154)
chr5 (122-189)||(16092679-16092746)
chr5 (120-189)||(31473085-31473154)
chr5 (122-156)||(20044755-20044789)
chr5 (127-179)||(25903825-25903876)
[»] chr8 (11 HSPs)
chr8 (124-239)||(30480982-30481096)
chr8 (123-189)||(40878028-40878093)
chr8 (124-189)||(35872848-35872913)
chr8 (123-181)||(36865330-36865389)
chr8 (124-234)||(5623185-5623294)
chr8 (123-181)||(13858966-13859024)
chr8 (131-168)||(30422850-30422887)
chr8 (129-168)||(2268829-2268868)
chr8 (126-161)||(21482125-21482160)
chr8 (145-191)||(14419685-14419731)
chr8 (195-239)||(36865383-36865427)
[»] chr6 (6 HSPs)
chr6 (122-234)||(3396093-3396207)
chr6 (124-181)||(3390132-3390189)
chr6 (124-181)||(15719423-15719480)
chr6 (123-234)||(32447763-32447876)
chr6 (123-181)||(3234190-3234247)
chr6 (122-181)||(26944924-26944981)
[»] chr2 (7 HSPs)
chr2 (123-189)||(45239435-45239501)
chr2 (125-198)||(17848812-17848885)
chr2 (122-179)||(38414512-38414569)
chr2 (124-199)||(28196334-28196409)
chr2 (122-179)||(31733229-31733286)
chr2 (123-181)||(17848154-17848211)
chr2 (208-239)||(38414472-38414503)
[»] chr4 (10 HSPs)
chr4 (122-234)||(12396294-12396407)
chr4 (124-232)||(18537923-18538029)
chr4 (122-181)||(12401290-12401349)
chr4 (124-189)||(19095696-19095761)
chr4 (124-189)||(38928651-38928715)
chr4 (124-189)||(24447049-24447114)
chr4 (124-181)||(37313544-37313600)
chr4 (123-166)||(33415977-33416020)
chr4 (124-187)||(13543808-13543870)
chr4 (122-181)||(18535282-18535339)
[»] scaffold0004 (1 HSPs)
scaffold0004 (124-189)||(79661-79725)
[»] scaffold0964 (1 HSPs)
scaffold0964 (124-156)||(1276-1308)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 54692217 - 54691996
Alignment:
Q  18 ttccataaacccggccttctcaaccctccttaatcattaatttttataatctcatggattattgataatggaagctattgtctggactagaagttgtttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  54692217 ttccataaacccggccttctcaaccctccttaatcattaatttttataatctcatggattattgataatggaagctattgtctggactagaagctgtttt 54692118  T
Q  118 aactattgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaattgaaaaattggattatgatttttgga 217  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||    
T  54692117 aactactgttgtgaaagtgacttaaaattggagaaattgaagtttgctggagttgtcaaaatcgaagcacgaattgaaaaatcggattacgatttttgga 54692018  T
Q  218 ccagaattggcactttccattc 239  Q
    ||||||||||||||||||||||    
T  54692017 ccagaattggcactttccattc 54691996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 6231169 - 6231232
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcac 187  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  6231169 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcac 6231232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 47149458 - 47149392
Alignment:
Q  123 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||    
T  47149458 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgatgaagctgtcaaaatcggagcacga 47149392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 3306518 - 3306583
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||    
T  3306518 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctaaagctgtcaaaatcggagcacga 3306583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 890310 - 890251
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    |||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  890310 attgttatgaaagtgactcaaaattggagaaattgaagtttgttgaagctgtcaaaatcg 890251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 51675290 - 51675228
Alignment:
Q  127 tgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    ||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| |||||||    
T  51675290 tgtgaaagtgactcaaaattggagaaattgatgttttctgaagctgtcaaaatcggagcacga 51675228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 53590908 - 53590968
Alignment:
Q  121 tattgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||||||    
T  53590908 tattgttgtgaaaataactcaaaattgaagaaattgaagtttgctgaagctgtcaaaatcg 53590968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 3314403 - 3314469
Alignment:
Q  123 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    ||||||||||||||| ||||||||| ||||||||||||||| || |||||||||||| | |||||||    
T  3314403 ttgttgtgaaagtgattcaaaattgaagaaattgaagtttgttgaagctgtcaaaataggagcacga 3314469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 23636725 - 23636764
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtt 161  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  23636725 attgttgtgaaagtgactcaaaattggagaaattggagtt 23636764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 881004 - 880953
Alignment:
Q  129 tgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    ||||||||||||||||| |||||| |||||||||| || ||||||||||||||    
T  881004 tgaaagtgactcaaaat-ggagaagttgaagtttgttgaagctgtcaaaatcg 880953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 25635120 - 25635159
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtt 161  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  25635120 attgttgtgaaagtgactcaaaattgaagaaattggagtt 25635159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 562249 - 562211
Alignment:
Q  123 ttgttgtgaaagtgactcaaaattggagaaattgaagtt 161  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  562249 ttgttgtgaaagtgactcaaaattgaagaaattggagtt 562211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 13420727 - 13420690
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtt 161  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  13420727 tgttgtgaaagtgactcaaaattgaagaaattggagtt 13420690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 40133656 - 40133772
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaattgaaaaattggattatgatttttggaccag 221  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| ||| || || ||||||| ||     
T  40133656 attgttgtgaaagtgactcaaaattagagaaattgaagtttgctgaagctgtcaaaatcggagcacgatttgaaaaatcggagtacgacttttggagcat 40133755  T
Q  222 aattggcactttccatt 238  Q
    |||||||||||||||||    
T  40133756 aattggcactttccatt 40133772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 50077195 - 50077128
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    ||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||| |||||||    
T  50077195 attgttgtgaaagtgactcaaaattagagaaattgaagtttgttgaagctgtcaaaatcggagcacga 50077128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 123 - 239
Target Start/End: Original strand, 17318611 - 17318728
Alignment:
Q  123 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaattgaaaaattggattatga-tttttggaccag 221  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||| |||| |||| ||||||| |||| |||| | |  |  | ||||||||||||    
T  17318611 ttgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatatcggagcacgatttgagaaatcgaagcacaattttttggaccag 17318710  T
Q  222 aattggcactttccattc 239  Q
    ||||| || |||||||||    
T  17318711 aattgacagtttccattc 17318728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 50079383 - 50079272
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaatt-gaaaaattggattatgatttttggaccaga 222  Q
    ||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| | | ||| || || |||| |||  | |||||||||| ||||    
T  50079383 tgttgtgaaagtgactccaaattgaagaaattgaagtttgctgaagctgtcaaaatcggaacccgatttggagaaatcggagcacgatttttggagcaga 50079284  T
Q  223 attggcactttc 234  Q
     |||||||||||    
T  50079283 tttggcactttc 50079272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 50308079 - 50308013
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | |||||||    
T  50308079 attgttgtgaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaattggagcacga 50308013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 12303032 - 12302967
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    |||||||||||||| |||||||||||||||||||||||||||  || |||||||| || |||||||    
T  12303032 tgttgtgaaagtgattcaaaattggagaaattgaagtttgctaaagttgtcaaaagcggagcacga 12302967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 14184148 - 14184109
Alignment:
Q  123 ttgttgtgaaagtgactcaaaattggagaaattgaagttt 162  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  14184148 ttgttgtgaaagtgacttaaaattggagaaattgaagttt 14184109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 31423437 - 31423397
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagttt 162  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  31423437 attgttgtgaaagtgactcaaaattgaagaaattgaggttt 31423397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 17352797 - 17352832
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaag 159  Q
    |||||||||||||||||||||||| |||||||||||    
T  17352797 tgttgtgaaagtgactcaaaattgaagaaattgaag 17352832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 8347829 - 8347787
Alignment:
Q  126 ttgtgaaagtgactcaaaattggagaaattgaagtttgctgga 168  Q
    ||||||||||||||||||||  ||||||||||| |||||||||    
T  8347829 ttgtgaaagtgactcaaaatctgagaaattgaaatttgctgga 8347787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 8954375 - 8954403
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggag 150  Q
    |||||||||||||||||||||||||||||    
T  8954375 attgttgtgaaagtgactcaaaattggag 8954403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 16430821 - 16430861
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagttt 162  Q
    |||||||||||||||||||||||||| | |||||| |||||    
T  16430821 attgttgtgaaagtgactcaaaattgaataaattggagttt 16430861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 31425539 - 31425499
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagttt 162  Q
    |||||| ||||||||||||||| ||||||||||||| ||||    
T  31425539 attgttttgaaagtgactcaaatttggagaaattgaggttt 31425499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 20137670 - 20137552
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaattg-aaaaattggattatgatttttggacca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||| ||| |||||| ||| || |||||| ||| ||    
T  20137670 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgttataatcggagcacgatttgaaaaaatcggagtacgattttcggagca 20137571  T
Q  221 gaattggcactttccattc 239  Q
    |||||||||||||||||||    
T  20137570 gaattggcactttccattc 20137552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 4296455 - 4296390
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  4296455 tgttgtgaaagtgactcaaaattggagaaattgaagcttgctgaagctgtcaaaatcggagcacga 4296390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 9680540 - 9680598
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  9680540 attgttgtgaaagtgactcaaaattggagaaatt-aagtttgctgaagctgtcaaaatcg 9680598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 42222888 - 42222952
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  42222888 tgttgtgaaagtgacttaaaattggagaaattg-agtttgctgaagctgtcaaaatcggagcacga 42222952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 11355010 - 11355066
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    |||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  11355010 tgttgtgaaagtgactcaaaattgaagaaattg-agtttgctgaagctgtcaaaatcg 11355066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 24817909 - 24817852
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    |||||||||||||||||||||||||||||||||||||||| || |  |||||||||||    
T  24817909 tgttgtgaaagtgactcaaaattggagaaattgaagtttgttgaatttgtcaaaatcg 24817852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 9678864 - 9678926
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcac 187  Q
    |||||||||| ||||||||||||||||||||| |||| || || |||||||||||||| |||||    
T  9678864 tgttgtgaaaatgactcaaaattggagaaatt-aagtatgttgaagctgtcaaaatcggagcac 9678926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 24815625 - 24815587
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagt 160  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24815625 attgttgtgaaagtcactcaaaattggagaaattgaagt 24815587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 22829171 - 22829139
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattg 156  Q
    |||||||||||||||||||||||| ||||||||    
T  22829171 tgttgtgaaagtgactcaaaattgaagaaattg 22829139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 39146524 - 39146492
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattg 156  Q
    |||||||||||||||||||||||| ||||||||    
T  39146524 tgttgtgaaagtgactcaaaattgaagaaattg 39146492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 36208298 - 36208414
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga-attgaaaaattggattatgatttttggaccaga 222  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||  ||||||||||||| ||  ||||||||| || |    
T  36208298 tgttgtgaaagtgacttaaaattggtgaaattgaagtttgctgaagctgtcaaaatcggagcacgattttgaaaaattggagtacaatttttggagcaaa 36208397  T
Q  223 attggcactttccattc 239  Q
    |||| ||||||||||||    
T  36208398 attgacactttccattc 36208414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 1190154 - 1190043
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaattgaaaaattggattatga-tttttggaccaga 222  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |||| |||  |||  | || |||||||| ||||    
T  1190154 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaattggagcacgatttgagaaaacggagcacgattttttggagcaga 1190055  T
Q  223 attggcactttc 234  Q
    ||||||||||||    
T  1190054 attggcactttc 1190043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 16092746 - 16092679
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  16092746 attgttgtgaaactgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcacga 16092679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 31473154 - 31473085
Alignment:
Q  120 ctattgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  31473154 ctattgttgtgaaagtgatttaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcacga 31473085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 20044755 - 20044789
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattg 156  Q
    |||||||||||||||||||||||||| ||||||||    
T  20044755 attgttgtgaaagtgactcaaaattgaagaaattg 20044789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 25903825 - 25903876
Alignment:
Q  127 tgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaat 179  Q
    ||||||||||| |||||||||||||||||| ||||||| | |||| |||||||    
T  25903825 tgtgaaagtgattcaaaattggagaaattg-agtttgccgaagctatcaaaat 25903876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 30481096 - 30480982
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaattgaaaaattggattatgatttttggaccagaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||| ||| || || ||||||| || ||    
T  30481096 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgatttgaaaaatcggagtacga-ttttggagcacaa 30480998  T
Q  224 ttggcactttccattc 239  Q
    |||||| ||| |||||    
T  30480997 ttggcaattttcattc 30480982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 40878093 - 40878028
Alignment:
Q  123 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  40878093 ttgttgtgaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaatcggagcacga 40878028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 35872913 - 35872848
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    ||||||||||| |||||||||||| | |||||||||||||||| |||||||||||| | |||||||    
T  35872913 tgttgtgaaagggactcaaaattgaataaattgaagtttgctgaagctgtcaaaattggagcacga 35872848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 36865330 - 36865389
Alignment:
Q  123 ttgttgtgaaagtgactcaaaattggagaaattgaag-tttgctggagctgtcaaaatcg 181  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||| || |||||||||||    
T  36865330 ttgttgtgaaagtgacttaaaattggagaaattgaagttttgctgaagttgtcaaaatcg 36865389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 5623294 - 5623185
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaatt-gaaaaattggattatgattt-ttggaccag 221  Q
    ||||||||||||   ||||||||||||||||| |||||||||| |||||||||||||| ||| ||| || || |||| |||  | ||||| ||||| |||    
T  5623294 tgttgtgaaagt---tcaaaattggagaaattaaagtttgctgaagctgtcaaaatcggagcccgatttggagaaatcggagcacgatttattggagcag 5623198  T
Q  222 aattggcactttc 234  Q
    |||||||||||||    
T  5623197 aattggcactttc 5623185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 13859024 - 13858966
Alignment:
Q  123 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    ||||||||||| ||||| ||||||||||||||| ||||||| || | ||||||||||||    
T  13859024 ttgttgtgaaaatgactaaaaattggagaaattaaagtttgttgaatctgtcaaaatcg 13858966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 30422850 - 30422887
Alignment:
Q  131 aaagtgactcaaaattggagaaattgaagtttgctgga 168  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  30422850 aaagtgactcaaaattgaagaaattgaagtttgctgga 30422887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 2268868 - 2268829
Alignment:
Q  129 tgaaagtgactcaaaattggagaaattgaagtttgctgga 168  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  2268868 tgaaagtgactcaaaattgaagaaattaaagtttgctgga 2268829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 161
Target Start/End: Original strand, 21482125 - 21482160
Alignment:
Q  126 ttgtgaaagtgactcaaaattggagaaattgaagtt 161  Q
    |||||||||||||||||||||| |||||||||||||    
T  21482125 ttgtgaaagtgactcaaaattgaagaaattgaagtt 21482160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 14419731 - 14419685
Alignment:
Q  145 ttggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaat 191  Q
    |||||||||||||||||||||| | |||||||||||| ||| |||||    
T  14419731 ttggagaaattgaagtttgctgaatctgtcaaaatcggagcccgaat 14419685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 36865383 - 36865427
Alignment:
Q  195 aaaattggattatgatttttggaccagaattggcactttccattc 239  Q
    ||||| ||| || |||||||||| |||||||||||||||||||||    
T  36865383 aaaatcggagtacgatttttggagcagaattggcactttccattc 36865427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 3396093 - 3396207
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaatt-gaaaaattggattatgatttt-tggacc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || || |||| |||  | |||||| |||| |    
T  3396093 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcgaagcccgatttggagaaatcggagcacgattttctggagc 3396192  T
Q  220 agaattggcactttc 234  Q
    |||||||||||||||    
T  3396193 agaattggcactttc 3396207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 3390132 - 3390189
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  3390132 tgttgtgaaagtgactcaaaattggagaaattgaagtttacagaagctgtcaaaatcg 3390189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 15719423 - 15719480
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    |||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  15719423 tgttgtgaaagtgactcaaaattggagaaattaaagtttgctgaatctgtcaaaatcg 15719480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 32447876 - 32447763
Alignment:
Q  123 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaattgaaaaattggattatga-tttttggacca- 220  Q
    ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||  | || |||| |||| |||| |||  |||| |||||||| ||     
T  32447876 ttgttgtgaaagtgactcaaaattggagaaatttaagtttgttgaagctgtcaaaaaaggagtacgatttgagaaatcggagcatgattttttggagcag 32447777  T
Q  221 gaattggcactttc 234  Q
    ||||||||||||||    
T  32447776 gaattggcactttc 32447763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 3234247 - 3234190
Alignment:
Q  123 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  3234247 ttgtggtgaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaatcg 3234190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 26944924 - 26944981
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    |||||||||||||||||||||||||| |||||||| ||||  |||  |||||||||||||    
T  26944924 attgttgtgaaagtgactcaaaattgaagaaattggagtt--ctgatgctgtcaaaatcg 26944981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 45239501 - 45239435
Alignment:
Q  123 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  45239501 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcacga 45239435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 17848812 - 17848885
Alignment:
Q  125 gttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaattgaaaaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| ||| ||||    
T  17848812 gttgtgaaagtgactcaaaattggagaaattgaagtttgctgaaactgtcaaaatcgaagcccgatttggaaaa 17848885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 38414569 - 38414512
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaat 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38414569 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaat 38414512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 28196334 - 28196409
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaattgaaaaat 199  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || |||| |||| ||||    
T  28196334 tgttgtgaaagtgactcaaaaatggagaaattgaagtttgctgaagctgtcaaaatcggagtacgatttgagaaat 28196409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 31733286 - 31733229
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaat 179  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  31733286 attgttgtgaaagtgactcaaaattggagaaattgaagtttggtgaagctgtcaaaat 31733229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 17848154 - 17848211
Alignment:
Q  123 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    |||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  17848154 ttgttgggaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaatcg 17848211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 239
Target Start/End: Complemental strand, 38414503 - 38414472
Alignment:
Q  208 gatttttggaccagaattggcactttccattc 239  Q
    ||||||||||||||||||||||||||||||||    
T  38414503 gatttttggaccagaattggcactttccattc 38414472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 12396407 - 12396294
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaattgaaaaattggattatga-tttttggacca 220  Q
    |||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| ||| ||| |||| |||| ||| || || ||||| || ||    
T  12396407 attgttgtgaaagttactcaaaattggagaaattcaagtttgctgaagctgtcaaaatcggagcccgatttgagaaatcggagtacgattttttagagca 12396308  T
Q  221 gaattggcactttc 234  Q
    ||||||||||||||    
T  12396307 gaattggcactttc 12396294  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 18538029 - 18537923
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacgaattgaaaaattggattatgatttttggaccagaa 223  Q
    |||||||||||||||||||||||| |||||||||||||  ||| |||||||||||||| |  |||| ||||||||| ||| || ||||||| || |||||    
T  18538029 tgttgtgaaagtgactcaaaattgaagaaattgaagtt--ctgaagctgtcaaaatcggaatacgatttgaaaaatcggagtacgatttttagagcagaa 18537932  T
Q  224 ttggcactt 232  Q
    |||||||||    
T  18537931 ttggcactt 18537923  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 12401349 - 12401290
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    |||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  12401349 attgttgtgaaagttactcaaaattggagaaattcaagtttgctgaagctgtcaaaatcg 12401290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 19095696 - 19095761
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    |||||||||||||| | |||||||||||||||||||||||||| || ||||||||||| |||||||    
T  19095696 tgttgtgaaagtgatttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacga 19095761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 38928715 - 38928651
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    |||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  38928715 tgttgtgaaattgactcaaaattggagaaattg-agtttgctgaagctgtcaaaatcggagcacga 38928651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 24447114 - 24447049
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    ||||||||||| |||||||||||| | |||||||||||||||| |||||||||||| | |||||||    
T  24447114 tgttgtgaaagggactcaaaattgaataaattgaagtttgctgaagctgtcaaaattggagcacga 24447049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 37313600 - 37313544
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  37313600 tgttgtgaaagtgactcaaaattggagaaattgaagtttac-gaagctgtcaaaatcg 37313544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 33416020 - 33415977
Alignment:
Q  123 ttgttgtgaaagtgactcaaaattggagaaattgaagtttgctg 166  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  33416020 ttgttgtgaaagtgactcaaaattggagaaattgaaatttgctg 33415977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 13543808 - 13543870
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcac 187  Q
    |||||||||| ||||||||||||||||||||| |||| || || |||||||||||||| |||||    
T  13543808 tgttgtgaaaatgactcaaaattggagaaatt-aagtatgttgaagctgtcaaaatcggagcac 13543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 18535339 - 18535282
Alignment:
Q  122 attgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcg 181  Q
    ||||||||||||||||||||| |||| |||||||| ||||  ||  ||||||||||||||    
T  18535339 attgttgtgaaagtgactcaatattgaagaaattggagtt--ctaaagctgtcaaaatcg 18535282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 79661 - 79725
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctggagctgtcaaaatcgaagcacga 189  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  79661 tgttgtgaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaatcggagcacga 79725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0964 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 1308 - 1276
Alignment:
Q  124 tgttgtgaaagtgactcaaaattggagaaattg 156  Q
    |||||||||||||||||||||||| ||||||||    
T  1308 tgttgtgaaagtgactcaaaattgtagaaattg 1276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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