View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8441_high_2 (Length: 524)
Name: NF8441_high_2
Description: NF8441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8441_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 49 - 404
Target Start/End: Original strand, 11403599 - 11403955
Alignment:
| Q |
49 |
caaggtgtactcatctatataggctgtacaatatacattttttaagatgattttacttcctatgttagcatatcgaaccatttttctttgttaaatagaa |
148 |
Q |
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| T |
11403599 |
caaggtgtactcatctatataggctgtacaatatacattttttaagatgattttacttcctatgttagcatatcgaaccatttttctttgttaaatagaa |
11403698 |
T |
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| Q |
149 |
tcatctttcccacagcatacatagtgcagtacaagttgcttttactttatttttctagatagcatatggattgtgagcactttctaagacaaagagggta |
248 |
Q |
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| T |
11403699 |
tcatctttcccacagcatacatggtgcagtacaacttgcttttactttatttttctagattgcatatggattgtgagcactttctaagacaaagagggta |
11403798 |
T |
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| Q |
249 |
ggaagaaaggatggggcatccaatgctcaaaagtcagtagttggagtcaaaatatttaattgtacacttatcttatttaagag--agaatgtgaacatga |
346 |
Q |
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| T |
11403799 |
gaaagaaaggatggggcatccaatgctcaaaagtcagtagttggagtcaaaatatttaattgtacacttatcttatttaagagaaagaatgtgaacatga |
11403898 |
T |
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| Q |
347 |
ttttaatttaacttaactgtgaaattattttacccctacatcaaattcttaggtcaat |
404 |
Q |
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| T |
11403899 |
ttttaatttaacttaactgggaaattatttta-ccctacatcaaattcttaggtcaat |
11403955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 389 - 517
Target Start/End: Original strand, 11404150 - 11404278
Alignment:
| Q |
389 |
aaattcttaggtcaatccctatgtaacgtggactatatttccaaagaatttgcacttaatatatgaaaatatggtaaattatacttttctccctttcaag |
488 |
Q |
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| T |
11404150 |
aaattcttaggtcaatccctatgtaacgtggactatatttccaaagaatttgcacttaatatatgaaaatatggtaaattatacttttcttcctttcaag |
11404249 |
T |
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| Q |
489 |
tttttcctctagtttttaactaacaccaa |
517 |
Q |
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| T |
11404250 |
ttttttatctagtatttaactaacaccaa |
11404278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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