View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8441_high_7 (Length: 374)
Name: NF8441_high_7
Description: NF8441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8441_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 83 - 358
Target Start/End: Original strand, 44635464 - 44635739
Alignment:
| Q |
83 |
gcactcccaaacagtatataaaatttttctcgaatgcaactttcacaatttagaaaacttgtctatacattatacagggctgtctgatatctagttgtgc |
182 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44635464 |
gcactcccaaacagtatataaattttttctcgaatgcaactttcacaatttagaaaacttgtctatacattatacagggctatctgatatctagttgtgc |
44635563 |
T |
|
| Q |
183 |
ataatttataatgtacaaaactcgtatcggtaataagagttgcaatctgtaagtataatacaatagtggttgcactaaatcgccctccaaagactttatc |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44635564 |
ataatttataatgtacaaaactcgtatcggtaataagagttacaatctgcaagtataatacaatagtagttgcactaaatcgccctccaaagactttatc |
44635663 |
T |
|
| Q |
283 |
accaaatccaaaacatttcaaatcattgaaggattgccttaacgacaaaaatatctttacaagatcgataagtgat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44635664 |
accaaatccaaaacatttcaaatcattgaaggattgccttaacgacaaaaatatctttacaagatcgataagtgat |
44635739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University