View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8441_high_8 (Length: 371)
Name: NF8441_high_8
Description: NF8441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8441_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 1352878 - 1352524
Alignment:
| Q |
1 |
agatcccattttattgatagcataactctttccaacaacattcacatttccaaattcctcaaaaaccatatgagatttaatataaagagctaaatccatt |
100 |
Q |
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| T |
1352878 |
agatcccatcttattgatagcataactctttccaacaacattcacatttccaaattcttcaaaaaccatatgagatttaatataaagagctaaatccatt |
1352779 |
T |
|
| Q |
101 |
ctttctgagtccgatgaacaatcatcgagttgaagtaggtattgatttcttggatgatatatagctttcaacaatctcatcatcttcttactctctcctt |
200 |
Q |
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| T |
1352778 |
ctttctgagtccgatgaacaatcatcgagttgaagtaggtgttgatttcttggatgatatattgctttcaacaatctcatcatcttcttactctctcctt |
1352679 |
T |
|
| Q |
201 |
tcgtaccgaaaatccaatatgcaaacactggagggtacccttttccttttgatacaagaattttcttaggatcattgtagttttgttgtaaatttgtgac |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||||||| |
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| T |
1352678 |
tcgtgccgaaaatccaatatgcaaacactggagggtacccttttccttttgatacaagaactttcttaggatcattgtattgtttttgtaaatttgtgac |
1352579 |
T |
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| Q |
301 |
tgtggcataatatgaaacattaggaatattcaatcttgaaactgttgcaaataat |
355 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1352578 |
tgtggcataataagaaacattaggaatattcaatcttgaaactgttgcaaataat |
1352524 |
T |
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