View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8441_high_9 (Length: 328)
Name: NF8441_high_9
Description: NF8441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8441_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 51880995 - 51880855
Alignment:
| Q |
1 |
aaatttcagagaccaaagatatgaattacctaaaaaatagtttaattcaatttctagcttcaactatcgcatatgcaaacttttaaattttaatcgccat |
100 |
Q |
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| T |
51880995 |
aaatttcagagaccaaagatatgaattacctaaaaaaaagtttaattcaatttctagcttcaactatcgcatatgcaaacttttaaattttaatcgccat |
51880896 |
T |
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| Q |
101 |
aaaataataaacttttgatatgtcttcttccgtttttattc |
141 |
Q |
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| T |
51880895 |
aaaattataaacttttgatatgtcttcttccgtttttattc |
51880855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 51880800 - 51880710
Alignment:
| Q |
198 |
caacatccatttatatataaattcatatgtacatacatnnnnnnncaaaattaatcatatatagcataaaaacggcaagggttttgtaccc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51880800 |
caacatccatttatatataaattcatatgtacatacataaaaaaacaaaattaatcatatatagcataaaaacggcaagggttttgtaccc |
51880710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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