View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8441_low_10 (Length: 415)

Name: NF8441_low_10
Description: NF8441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8441_low_10
NF8441_low_10
[»] chr4 (5 HSPs)
chr4 (1-250)||(1390178-1390427)
chr4 (21-204)||(1397688-1397871)
chr4 (333-392)||(1390135-1390194)
chr4 (278-400)||(45645039-45645162)
chr4 (90-205)||(45645234-45645349)
[»] chr8 (5 HSPs)
chr8 (272-400)||(14191729-14191857)
chr8 (308-400)||(40717548-40717640)
chr8 (11-184)||(14200962-14201135)
chr8 (308-400)||(14182789-14182881)
chr8 (324-400)||(14200743-14200819)
[»] chr5 (4 HSPs)
chr5 (277-391)||(19649578-19649692)
chr5 (253-396)||(34665542-34665682)
chr5 (272-396)||(34645848-34645972)
chr5 (99-205)||(19649401-19649507)
[»] chr6 (2 HSPs)
chr6 (298-397)||(34302505-34302604)
chr6 (126-172)||(33893429-33893475)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 1390427 - 1390178
Alignment:
Q  1 attgatttataagagacatgggtccatttccaaggccaaccagaccagagctcttgccttcaaatgacaatgtattattatgtctaaaacctatcactgt 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1390427 attgatttataagagacacgggtccatttccaaggccaaccagaccagagctcttgccttcaaatgacaatgtattattatgtccaaaacctatcactgt 1390328  T
Q  101 tttaggaaatgaaatagaaaaaccagaggtgaaatctaatgtaagagtttccaaactaagatctccttgtgatattgatccatcaccatacttaatagta 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390327 tttaggaaatgaaatagaagaaccagaggtgaaatctaatgtaagagttttcaaactaagatctccttgtgatattgatccatcaccatacttaatagta 1390228  T
Q  201 tattcgcgagnnnnnnnnattacaagaggtagattcaaaagacttacatt 250  Q
    ||||||| ||        ||||||||||||||||||| ||| ||||||||    
T  1390227 tattcgcaagttttttttattacaagaggtagattcacaaggcttacatt 1390178  T

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Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 1397871 - 1397688
Alignment:
Q  21 ggtccatttccaaggccaaccagaccagagctcttgccttcaaatgacaatgtattattatgtctaaaacctatcactgttttaggaaatgaaatagaaa 120  Q
    ||||||||| ||||| |||||| ||||||||||| |||||||||| ||| | ||||  |||||| | |||||||||| |||||||| ||||||||||||     
T  1397871 ggtccatttgcaaggtcaaccacaccagagctctagccttcaaataacactatatttatatgtccacaacctatcacagttttaggcaatgaaatagaag 1397772  T
Q  121 aaccagaggtgaaatctaatgtaagagtttccaaactaagatctccttgtgatattgatccatcaccatacttaatagtatatt 204  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | |||||||||||    
T  1397771 aaccagaggtggaatctaatgtaagagtttctaaactaagatctccttgtgattttgatccatcaccatagtcaatagtatatt 1397688  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 333 - 392
Target Start/End: Complemental strand, 1390194 - 1390135
Alignment:
Q  333 ttcacaaggcttacattgaagccaaaccatgtcactaccagtatcaacaataccatataa 392  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1390194 ttcacaaggcttacattgaagccaaaccatgtcactacctgtatcaacaataccatataa 1390135  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 278 - 400
Target Start/End: Complemental strand, 45645162 - 45645039
Alignment:
Q  278 tgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactaccagtatc 377  Q
    |||||||||||| |||  | ||||||||  ||||||| |||||||||||||| |||| ||||||||  |||||||||||||| ||||||||||| |||||    
T  45645162 tgtaacttgatgattttgatggattaaacttaggagtggtttggttgtaacattgtttacaaggctcgcattgaagccaaacaatgtcactacctgtatc 45645063  T
Q  378 aacaataccatat-aacttaaatg 400  Q
     | |||||||||| ||||||||||    
T  45645062 gataataccatataaacttaaatg 45645039  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 45645349 - 45645234
Alignment:
Q  90 cctatcactgttttaggaaatgaaatagaaaaaccagaggtgaaatctaatgtaagagtttccaaactaagatctccttgtgatattgatccatcaccat 189  Q
    |||||||| |||||||||||||||| ||     |||| |||| |||| |||||||||||||| | ||||||||||||||||||   |||  |||| ||||    
T  45645349 cctatcacagttttaggaaatgaaacagggcttccagtggtggaatccaatgtaagagtttcaacactaagatctccttgtgaatgtgaatcatctccat 45645250  T
Q  190 acttaatagtatattc 205  Q
    | ||||| ||||||||    
T  45645249 agttaattgtatattc 45645234  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 272 - 400
Target Start/End: Complemental strand, 14191857 - 14191729
Alignment:
Q  272 tgttattgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactacc 371  Q
    |||| ||||||||||| | |||| | |||||||| |||||||| |||||||||||||| | || |||||||| ||||||||||||||| || ||||||||    
T  14191857 tgtttttgtaacttgacgatttcgacggattaaacataggagtggtttggttgtaacattcttgacaaggctcacattgaagccaaacaatatcactacc 14191758  T
Q  372 agtatcaacaataccatataacttaaatg 400  Q
     ||||||||||||||||||||||||||||    
T  14191757 ggtatcaacaataccatataacttaaatg 14191729  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 308 - 400
Target Start/End: Complemental strand, 40717640 - 40717548
Alignment:
Q  308 taggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactaccagtatcaacaataccatataacttaaatg 400  Q
    ||||||| |||||||||||||| |||||||||||||  |||||||||||||| ||||||||||| || |||||||| ||||||||||||||||    
T  40717640 taggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaatgtcactacctgtgtcaacaatgccatataacttaaatg 40717548  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 14201135 - 14200962
Alignment:
Q  11 aagagacatgggtccatttccaaggccaaccagaccagagctcttgccttcaaatgacaatgtattattatgtctaaaacctatcactgttttaggaaat 110  Q
    ||||||||| |||||| ||||||||||||| | |||||||||   ||| | ||| | |  ||||||  ||| || | | ||||||| |||||||||||||    
T  14201135 aagagacataggtccacttccaaggccaactataccagagcttgggccatgaaacgtccctgtatttctatatccacatcctatcattgttttaggaaat 14201036  T
Q  111 gaaatagaaaaaccagaggtgaaatctaatgtaagagtttccaaactaagatctccttgtgatattgatccatc 184  Q
    ||||  ||  | || | |||| |||||||||||||||| |||| |||||||| ||||||||| |||||||||||    
T  14201035 gaaactgagtagccggtggtggaatctaatgtaagagtctccacactaagatatccttgtgaaattgatccatc 14200962  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 400
Target Start/End: Complemental strand, 14182881 - 14182789
Alignment:
Q  308 taggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactaccagtatcaacaataccatataacttaaatg 400  Q
    ||||||| ||||| |||||||| | ||  |||||||  |||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||    
T  14182881 taggagttgtttgattgtaacattctttgcaaggctcgcattgaagccaaacaatgtcactacctgtatcagcaatgccatataacttaaatg 14182789  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 400
Target Start/End: Complemental strand, 14200819 - 14200743
Alignment:
Q  324 gtaacaatgttcacaaggcttacattgaagccaaaccatgtcactaccagtatcaacaataccatataacttaaatg 400  Q
    |||||| |||| |||||||| ||||||||||||||| | ||||||||| ||||||||||  ||| ||| ||||||||    
T  14200819 gtaacattgtttacaaggctcacattgaagccaaacaaggtcactacctgtatcaacaaagccaaataccttaaatg 14200743  T

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Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 277 - 391
Target Start/End: Original strand, 19649578 - 19649692
Alignment:
Q  277 ttgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactaccagtat 376  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  19649578 ttgtaacttgatgattttgaaggattaaatataggagtggtttgcttgtagcattgttcacaaggcttacattgaagccaaacaatgtcactacctgtat 19649677  T
Q  377 caacaataccatata 391  Q
    |||||| ||||||||    
T  19649678 caacaacaccatata 19649692  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 396
Target Start/End: Complemental strand, 34665682 - 34665542
Alignment:
Q  253 ttagacaaacaagaaatattgttattgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaa 352  Q
    ||||||||||||| |||   ||| |||||||| |||| |||  | |||||||| || ||||| |||||||||||||| ||||||||||||| ||||||||    
T  34665682 ttagacaaacaaggaat---gtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcacattgaa 34665586  T
Q  353 gccaaaccatgtcactaccagtatcaacaataccatataactta 396  Q
    ||||||| ||||||||||| |||||| ||||||| |||| ||||    
T  34665585 gccaaacaatgtcactacctgtatcagcaataccgtatatctta 34665542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 272 - 396
Target Start/End: Complemental strand, 34645972 - 34645848
Alignment:
Q  272 tgttattgtaacttgatggtttcaaaggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactacc 371  Q
    |||| |||||||| |||| |||  | |||||||| || ||||| |||||||||||||| |||||||||||||  |||||||||||||| |||||||||||    
T  34645972 tgtttttgtaactagatgattttgatggattaaaaatgggagtggtttggttgtaacattgttcacaaggctcgcattgaagccaaacaatgtcactacc 34645873  T
Q  372 agtatcaacaataccatataactta 396  Q
     |||||| |||||||||||| ||||    
T  34645872 tgtatcagcaataccatatatctta 34645848  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 19649401 - 19649507
Alignment:
Q  99 gttttaggaaatgaaatagaaaaaccagaggtgaaatctaatgtaagagtttccaaactaagatctccttgtgatattgatccatcaccatacttaatag 198  Q
    |||||||||||||||| ||||  ||| | |||| |||| ||||||||||| || | |||||| |||||||||||   ||||  ||||| | | |||||||    
T  19649401 gttttaggaaatgaaacagaatgaccggtggtggaatccaatgtaagagtctcaacactaagttctccttgtgaatatgattgatcactaaagttaatag 19649500  T
Q  199 tatattc 205  Q
    |||||||    
T  19649501 tatattc 19649507  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 397
Target Start/End: Complemental strand, 34302604 - 34302505
Alignment:
Q  298 ggattaaagataggagtcgtttggttgtaacaatgttcacaaggcttacattgaagccaaaccatgtcactaccagtatcaacaataccatataacttaa 397  Q
    ||||||||  ||||||| ||||| |||||||| |||||||||||||  ||||| ||||| || ||||||||||| ||||| |||||||||||| ||||||    
T  34302604 ggattaaacttaggagtggtttgattgtaacattgttcacaaggctcgcattgtagccatacaatgtcactacctgtatcgacaataccatatgacttaa 34302505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 33893475 - 33893429
Alignment:
Q  126 gaggtgaaatctaatgtaagagtttccaaactaagatctccttgtga 172  Q
    |||||| |||||||||| ||||| |||| ||||||||||||||||||    
T  33893475 gaggtggaatctaatgttagagtctccatactaagatctccttgtga 33893429  T

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