View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8441_low_12 (Length: 403)

Name: NF8441_low_12
Description: NF8441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8441_low_12
NF8441_low_12
[»] scaffold0103 (1 HSPs)
scaffold0103 (229-382)||(13592-13746)
[»] chr8 (4 HSPs)
chr8 (18-139)||(20265820-20265943)
chr8 (18-139)||(21052449-21052572)
chr8 (313-378)||(16003406-16003473)
chr8 (335-379)||(9238680-9238724)
[»] chr3 (5 HSPs)
chr3 (309-382)||(25239879-25239952)
chr3 (313-379)||(48085892-48085960)
chr3 (339-379)||(8694011-8694051)
chr3 (339-379)||(9045898-9045938)
chr3 (303-379)||(27663329-27663404)
[»] chr5 (3 HSPs)
chr5 (277-378)||(36574248-36574351)
chr5 (313-382)||(23218036-23218105)
chr5 (299-378)||(1817680-1817764)
[»] chr2 (2 HSPs)
chr2 (313-379)||(31627286-31627354)
chr2 (342-386)||(17421011-17421055)
[»] scaffold0003 (1 HSPs)
scaffold0003 (276-343)||(326301-326368)
[»] chr4 (2 HSPs)
chr4 (339-378)||(29905839-29905878)
chr4 (315-375)||(29906011-29906074)


Alignment Details
Target: scaffold0103 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 229 - 382
Target Start/End: Complemental strand, 13746 - 13592
Alignment:
Q  229 gtcataggtttatgtgccaccctctctctacaaacactgttcatcat-gtctccttgccaagtctccgtcagtttggtctatcaaacatatctacacaac 327  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||| |||||   ||||||||||||||||||||||||||| |||    
T  13746 gtcataggtttatgtgccaccctctctctacaggcactgttcatcattgtctccttgccatgtctctaccagtttggtctatcaaacatatctacataac 13647  T
Q  328 ataaaataatgaaaaatcaatcaatttttcattaagacattttatcaaacacttg 382  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13646 ataaaacaatgaaaaatcaatcaatttttcattaagacattttatcaaacacttg 13592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 20265820 - 20265943
Alignment:
Q  18 agaattgtcttgccaaattcaatgtata--taaatgccatgaatgatgcacgttaagctaaagagaaaatcatgcagagctaaaa-gaagaataagatgg 114  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||| |||||||||  | ||| || ||||| ||||||||| || |    
T  20265820 agaattgtcttgccaaattcactgtatatataaatgccatgaatgatgcaagttaagctcaagagaaaaagacgcacagttaaaaggaagaataaaat-g 20265918  T
Q  115 gtcaatcatcaattaattcggtgca 139  Q
    || ||||||||||||| ||||||||    
T  20265919 gttaatcatcaattaaatcggtgca 20265943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 21052449 - 21052572
Alignment:
Q  18 agaattgtcttgccaaattcaatgtata--taaatgccatgaatgatgcacgttaagctaaagagaaaatcatgcagagctaaaa-gaagaataagatgg 114  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||| |||||||||  | ||| || ||||| ||||||||| || |    
T  21052449 agaattgtcttgccaaattcactgtatatataaatgccatgaatgatgcaagttaagctcaagagaaaaagacgcacagttaaaaggaagaataaaat-g 21052547  T
Q  115 gtcaatcatcaattaattcggtgca 139  Q
    || ||||||||||||| ||||||||    
T  21052548 gttaatcatcaattaaatcggtgca 21052572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 378
Target Start/End: Complemental strand, 16003473 - 16003406
Alignment:
Q  313 acatatctacacaacataaaataatg--aaaaatcaatcaatttttcattaagacattttatcaaaca 378  Q
    |||||||||| |||||||||| ||||  |||||||||| ||||||||||  |||||||||||||||||    
T  16003473 acatatctacgcaacataaaacaatgcaaaaaatcaattaatttttcatagagacattttatcaaaca 16003406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 9238680 - 9238724
Alignment:
Q  335 aatgaaaaatcaatcaatttttcattaagacattttatcaaacac 379  Q
    ||||||||| ||| ||| |||||||| ||||||||||||||||||    
T  9238680 aatgaaaaaacaaacaaattttcattgagacattttatcaaacac 9238724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 25239952 - 25239879
Alignment:
Q  309 tcaaacatatctacacaacataaaataatgaaaaatcaatcaatttttcattaagacattttatcaaacacttg 382  Q
    ||||||||| ||||||||||||||| |||||||||||||||||   |||||| |||||||||||||||||||||    
T  25239952 tcaaacataactacacaacataaaacaatgaaaaatcaatcaacaattcattgagacattttatcaaacacttg 25239879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 379
Target Start/End: Original strand, 48085892 - 48085960
Alignment:
Q  313 acatatctacacaacataaaataatg--aaaaatcaatcaatttttcattaagacattttatcaaacac 379  Q
    |||||| |||||||||||||||||||  |||||||||| ||||||||||| ||||||||||||||||||    
T  48085892 acatatgtacacaacataaaataatgcaaaaaatcaattaatttttcattgagacattttatcaaacac 48085960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 8694011 - 8694051
Alignment:
Q  339 aaaaatcaatcaatttttcattaagacattttatcaaacac 379  Q
    ||||| ||| ||| |||||||||||||||||||||||||||    
T  8694011 aaaaaacaaacaaattttcattaagacattttatcaaacac 8694051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 9045898 - 9045938
Alignment:
Q  339 aaaaatcaatcaatttttcattaagacattttatcaaacac 379  Q
    ||||| ||| ||| |||||||||||||||||||||||||||    
T  9045898 aaaaaacaaacaaattttcattaagacattttatcaaacac 9045938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 379
Target Start/End: Original strand, 27663329 - 27663404
Alignment:
Q  303 ggtctatcaaacatatctacacaacataaaataatgaaaaatcaatcaatttttcattaagacattttatcaaacac 379  Q
    ||||| ||| |||||||| |||||||||||  |||||||||  ||| |||||||  || ||||||||||||||||||    
T  27663329 ggtctgtcagacatatcttcacaacataaataaatgaaaaa-aaataaattttttgttgagacattttatcaaacac 27663404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 36574248 - 36574351
Alignment:
Q  277 tctccttgccaagtctccgtcagtttggtctatcaaacatatctacac-aacataaaataatg-aaaaatcaatcaatttttcattaagacattttatca 374  Q
    ||||||||||||||||| ||  ||||||||| ||| |||||||| ||| ||||||||| |||| |||||||||||||  ||||||| |||||| ||||||    
T  36574248 tctccttgccaagtctctgtttgtttggtctgtcagacatatcttcacaaacataaaacaatgaaaaaatcaatcaaactttcattgagacatcttatca 36574347  T
Q  375 aaca 378  Q
    ||||    
T  36574348 aaca 36574351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 382
Target Start/End: Original strand, 23218036 - 23218105
Alignment:
Q  313 acatatctacacaacataaaataatgaaaa-atcaatcaatttttcattaagacattttatcaaacacttg 382  Q
    |||||||||||| |||||||| |||||||| |||||||||||||||||| ||||| |||||||||||||||    
T  23218036 acatatctacacgacataaaacaatgaaaaaatcaatcaatttttcattgagaca-tttatcaaacacttg 23218105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 1817680 - 1817764
Alignment:
Q  299 gtttggtctatcaaacatatctacacaacataaaa---taatg--aaaaatcaatcaatttttcattaagacattttatcaaaca 378  Q
    ||||||| | ||| |||||| ||||||||||||||   |||||  ||||||||| ||||||||||||||||||||||||||||||    
T  1817680 gtttggtttttcagacatatttacacaacataaaacaataatgcaaaaaatcaaacaatttttcattaagacattttatcaaaca 1817764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 31627354 - 31627286
Alignment:
Q  313 acatatctacacaacataaaataatg--aaaaatcaatcaatttttcattaagacattttatcaaacac 379  Q
    |||||||||||||||||| || ||||  |||||||||| || |||||||| |||| |||||||||||||    
T  31627354 acatatctacacaacatataacaatgcaaaaaatcaattaaattttcattgagacgttttatcaaacac 31627286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 17421055 - 17421011
Alignment:
Q  342 aatcaatcaatttttcattaagacattttatcaaacacttgatgt 386  Q
    ||||||| || || ||||| |||||||||||||||||||||||||    
T  17421055 aatcaataaaattgtcattgagacattttatcaaacacttgatgt 17421011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 326368 - 326301
Alignment:
Q  276 gtctccttgccaagtctccgtcagtttggtctatcaaacatatctacacaacataaaataatgaaaaa 343  Q
    ||||| |||||||||||| |||  |||||||  ||| |||||||||| |||||||||| |||||||||    
T  326368 gtctcattgccaagtctctgtctatttggtcactcagacatatctacccaacataaaacaatgaaaaa 326301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 378
Target Start/End: Complemental strand, 29905878 - 29905839
Alignment:
Q  339 aaaaatcaatcaatttttcattaagacattttatcaaaca 378  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  29905878 aaaaatcaattaatttttcattgagacattttatcaaaca 29905839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 29906074 - 29906011
Alignment:
Q  315 atatctacacaacataaaat-aatg--aaaaatcaatcaatttttcattaagacattttatcaa 375  Q
    |||||||||||||||||||  ||||  |||||||||| ||||||| ||| ||||||||||||||    
T  29906074 atatctacacaacataaaaacaatgcaaaaaatcaattaattttttattgagacattttatcaa 29906011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University