View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8441_low_13 (Length: 375)

Name: NF8441_low_13
Description: NF8441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8441_low_13
NF8441_low_13
[»] chr2 (3 HSPs)
chr2 (1-128)||(18929761-18929887)
chr2 (1-132)||(17403247-17403377)
chr2 (30-100)||(25519999-25520068)
[»] chr3 (3 HSPs)
chr3 (3-133)||(9033046-9033177)
chr3 (1-132)||(4770178-4770307)
chr3 (1-103)||(4765286-4765387)
[»] chr6 (3 HSPs)
chr6 (1-132)||(17525315-17525444)
chr6 (1-102)||(31125745-31125845)
chr6 (11-129)||(22394009-22394125)
[»] chr8 (1 HSPs)
chr8 (1-147)||(28371560-28371705)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-132)||(373696-373825)
[»] chr5 (4 HSPs)
chr5 (1-105)||(20064063-20064164)
chr5 (1-36)||(25951748-25951783)
chr5 (1-35)||(19217727-19217761)
chr5 (1-35)||(20058300-20058334)
[»] chr7 (2 HSPs)
chr7 (1-48)||(2545817-2545864)
chr7 (1-37)||(2563197-2563233)
[»] chr1 (1 HSPs)
chr1 (29-147)||(22619579-22619695)
[»] chr4 (1 HSPs)
chr4 (4-36)||(11362128-11362160)


Alignment Details
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 18929761 - 18929887
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttga 100  Q
    ||||||||||||| ||||||||||||||||||||||||| |||| ||| ||||| |||||||||| ||||||| |||| |||||||||||||||||||||    
T  18929761 acattaaatgaggttggtgaaaataccagctaacaaatttcccctcaa-aaatgtcattttcgactgaatatattcaaaggagagaattgacatttttga 18929859  T
Q  101 gaaaacgctaagtatttcaaagcatgat 128  Q
    |||||| |||||||||||||||||||||    
T  18929860 gaaaactctaagtatttcaaagcatgat 18929887  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 17403247 - 17403377
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttga 100  Q
    |||||||||||||||||| ||| |||||||||| ||||| |||   || |||||||||||| |||  || ||  || | |||||  |||||||||||| |    
T  17403247 acattaaatgaggctggtaaaattaccagctaaaaaatttcccaaaaaaaaatgccatttttgactaaagattttcgaaggagaagattgacatttttca 17403346  T
Q  101 gaaaacgctaagtatttcaaagcatgatgtca 132  Q
    | |||| |||||||||||||||||||||||||    
T  17403347 g-aaactctaagtatttcaaagcatgatgtca 17403377  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 25520068 - 25519999
Alignment:
Q  30 ctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttga 100  Q
    ||||||||||||| ||||| |||||||||||||||| |||||||||| | ||||| ||||| |||||||||    
T  25520068 ctaacaaattgccacccaa-aaatgccattttcgactgaatataatcgaaggagataattggcatttttga 25519999  T

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Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 9033177 - 9033046
Alignment:
Q  3 attaaatgaggctggtgaaaataccagctaacaaatt--gccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttga 100  Q
    |||||||||||||||||||||||||||||||||||||  | ||||||| |||||||||||||||| |||||||||||| |||| |||||| ||||||||     
T  9033177 attaaatgaggctggtgaaaataccagctaacaaattgggacccccaa-aaatgccattttcgactgaatataatcaaaggagggaattggcatttttgg 9033079  T
Q  101 gaaaacgctaagtatttcaaagcatgatgtcac 133  Q
    |||||    ||||||| ||||||||||||||||    
T  9033078 gaaaaattaaagtattccaaagcatgatgtcac 9033046  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 4770178 - 4770307
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttga 100  Q
    |||||||| ||| ||| | ||| ||||||||||||| || ||||||  ||||||||||||||||| |||| || || | ||||||||||| ||||||| |    
T  4770178 acattaaacgagtctgttaaaattaccagctaacaatttacccccct-gaaatgccattttcgactgaatctattcgaaggagagaattggcatttttta 4770276  T
Q  101 gaaaacgctaagtatttcaaagcatgatgtca 132  Q
    | |||| |||||||||||||||||||||||||    
T  4770277 g-aaactctaagtatttcaaagcatgatgtca 4770307  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 4765387 - 4765286
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttga 100  Q
    |||||||||||||||||||||||| ||| |||||||||| | |||||| |||||||||||||||| ||| | | |  | |||||||||||  ||||||||    
T  4765387 acattaaatgaggctggtgaaaattccaactaacaaattacaccccaa-aaatgccattttcgactgaacaaattagaaggagagaattggtatttttga 4765289  T
Q  101 gaa 103  Q
    |||    
T  4765288 gaa 4765286  T

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Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 17525315 - 17525444
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttga 100  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| |||||||||  |||||| |||| |||||||||    ||||||||    
T  17525315 acattaaatgagactggtgaaattaccagctaacaaattgccccccaa-aaatgctattttcgacaaaatatattcaaaggagagaatcagaatttttga 17525413  T
Q  101 gaaaacgctaagtatttcaaagcatgatgtca 132  Q
     ||||| |||||||||| ||||||||||||||    
T  17525414 -aaaactctaagtatttaaaagcatgatgtca 17525444  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31125845 - 31125745
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttga 100  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||||| || |||||  |||||| || ||||||| |||| ||||||||||| |||||||||    
T  31125845 acattaaatgaggatggtgaaaatatcagctaaaaaattgccccctaa-aaatgaaattttctactgaatatattcaaaggagagaattggcatttttga 31125747  T
Q  101 ga 102  Q
    ||    
T  31125746 ga 31125745  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 22394125 - 22394009
Alignment:
Q  11 aggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgcta 110  Q
    |||||||||||| ||||| |||||| |||||||||||| ||||| ||||||||||  ||| || |  | ||||| |||||  ||||||||| |||| |||    
T  22394125 aggctggtgaaattaccaactaacagattgccccccaa-aaatgtcattttcgacaaaatctatttgaaggagataattggaatttttgag-aaactcta 22394028  T
Q  111 agtatttcaaagcatgatg 129  Q
    |||||| || |||||||||    
T  22394027 agtattccagagcatgatg 22394009  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 28371560 - 28371705
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttga 100  Q
    ||||||||| | ||| |||||||||||| ||||||||||||| || || |||||  ||||||||| ||||| | ||||  ||||||||||||||||||||    
T  28371560 acattaaattatgctagtgaaaataccaactaacaaattgccaccaaa-aaatgttattttcgactgaatacattcaaaagagagaattgacatttttga 28371658  T
Q  101 gaaaacgctaagtatttcaaagcatgatgtcacaattatcatgactt 147  Q
    |||||| ||| ||||| ||||||||||||||||  | ||||||||||    
T  28371659 gaaaactctatgtattccaaagcatgatgtcactctaatcatgactt 28371705  T

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Target: scaffold0002 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 373825 - 373696
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttga 100  Q
    ||||||||||||| |||| |||  |||| ||||||||||||||||||| ||| ||||||||||||  ||  |  |  | | ||||||||| |||||||||    
T  373825 acattaaatgaggttggtaaaataaccaactaacaaattgccccccaaaaaa-gccattttcgacttaaattttttgaagaagagaattgtcatttttga 373727  T
Q  101 gaaaacgctaagtatttcaaagcatgatgtca 132  Q
     ||||| |||||||||||||||||||||||||    
T  373726 -aaaactctaagtatttcaaagcatgatgtca 373696  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 20064164 - 20064063
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttga 100  Q
    |||||||| |||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||  ||   || |||| |||||| |||||||||||||     
T  20064164 acattaaacgaggctggtgaaaataacagctaacaaattgtcccccaa-aaatgtcattttcgaatga--ctactcaaaggagaggattgacatttttgg 20064068  T
Q  101 gaaaa 105  Q
    |||||    
T  20064067 gaaaa 20064063  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25951748 - 25951783
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaacaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  25951748 acattaaatgaggctggtgaaaataccagctaacaa 25951783  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19217761 - 19217727
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaaca 35  Q
    |||||||||||||||||||||| ||||||||||||    
T  19217761 acattaaatgaggctggtgaaattaccagctaaca 19217727  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 20058334 - 20058300
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaaca 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  20058334 acattaaatgaggctggtgaaaatatcagctaaca 20058300  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2545817 - 2545864
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaacaaattgccccccaa 48  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  2545817 acattaaatgaggctggtgaaattaccagctaacaaattgcctcccaa 2545864  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2563197 - 2563233
Alignment:
Q  1 acattaaatgaggctggtgaaaataccagctaacaaa 37  Q
    |||||||||||||||||||||| ||||||||||||||    
T  2563197 acattaaatgaggctggtgaaattaccagctaacaaa 2563233  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 22619695 - 22619579
Alignment:
Q  29 gctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgctaagtatttcaaagcatgat 128  Q
    |||||||||||||| ||||| ||||| |||||||||| ||||| | || | ||||| |||||  | |||||| |||||  ||||||||||||||||||||    
T  22619695 gctaacaaattgcctcccaa-aaatgtcattttcgactgaatacattcgaaggagataattggtaattttga-aaaactataagtatttcaaagcatgat 22619598  T
Q  129 gtcacaattatcatgactt 147  Q
    |||| | | ||||||||||    
T  22619597 gtcatattaatcatgactt 22619579  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 11362128 - 11362160
Alignment:
Q  4 ttaaatgaggctggtgaaaataccagctaacaa 36  Q
    |||||||||||||||||||||||||||||||||    
T  11362128 ttaaatgaggctggtgaaaataccagctaacaa 11362160  T

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