View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8441_low_22 (Length: 236)
Name: NF8441_low_22
Description: NF8441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8441_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 17379936 - 17380147
Alignment:
| Q |
18 |
aaaaatgctgcagattgtcccaaacttcaaactcttaactttataaagattagtttgacacatcaatgggtagtttatactgnnnnnnnactc--tctta |
115 |
Q |
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| T |
17379936 |
aaaaatgctacagattggcccaaacttcaaactcttaactttataaagatttgtttgacacatcaatgggtagtttatgctgtttttttactcgatctta |
17380035 |
T |
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| Q |
116 |
tcttctgagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaacatagagcattgggaatatccttatcatgttctagattg |
215 |
Q |
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| T |
17380036 |
tcttctgagtatttttacaaatcctactttgtctttgatcgacaagaaaagaactcaacaacttagagcattgggaatatccatatcatgttctagattg |
17380135 |
T |
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| Q |
216 |
tgtttcatctca |
227 |
Q |
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|||||||||||| |
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| T |
17380136 |
tgtttcatctca |
17380147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 17377460 - 17377564
Alignment:
| Q |
121 |
tgagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaa-catagagcattgggaatatccttatcatgttctagattgtgtt |
219 |
Q |
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| T |
17377460 |
tgagtatttttacaaatcctattttgtctcggatcgacaggcgaataattcaacaaccatag---attgggaatatccagatcatgttccagaatgtgtt |
17377556 |
T |
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| Q |
220 |
tcatctca |
227 |
Q |
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|| ||||| |
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| T |
17377557 |
tcgtctca |
17377564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 17383826 - 17383926
Alignment:
| Q |
122 |
gagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaa-catagagcattgggaatatccttatcatgttctagattgtgttt |
220 |
Q |
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| T |
17383826 |
gagtatttttacatatcctattttgtctcggattgacaggcggagaattcagcaagcatagagcattgggaatatccagatcatgttccagaatgtgttt |
17383925 |
T |
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| Q |
221 |
c |
221 |
Q |
| |
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| T |
17383926 |
c |
17383926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 17392578 - 17392642
Alignment:
| Q |
164 |
aagaactcaacaac-atagagcattgggaatatccttatcatgttctagattgtgtttcatctca |
227 |
Q |
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| T |
17392578 |
aagaattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtttcgtctca |
17392642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 26052928 - 26052821
Alignment:
| Q |
121 |
tgagtatttttacaaatcctattttgtctttgatcgacaagaaaagaactcaacaac-atagagcattgggaatatccttatcatgttctagattgtgtt |
219 |
Q |
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||||||||||||||||||||||||||| | ||| |||| || ||| | |||||||| |||||||||||||||||||| ||||||||| ||| |||||| |
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| T |
26052928 |
tgagtatttttacaaatcctattttgtatcggattgacaggagaagtattcaacaaccatagagcattgggaatatccagatcatgttccagaatgtgtt |
26052829 |
T |
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| Q |
220 |
tcatctca |
227 |
Q |
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|||||||| |
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| T |
26052828 |
tcatctca |
26052821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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