View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8441_low_3 (Length: 571)
Name: NF8441_low_3
Description: NF8441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8441_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 117 - 556
Target Start/End: Original strand, 28029876 - 28030314
Alignment:
| Q |
117 |
gacatgtttaaaactaatctttcagctgttcactatgtacagatctaattaaacattnnnnnnnggacagaaaatgagatcttaacttttacatgcctaa |
216 |
Q |
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| T |
28029876 |
gacatgtttaaaactaatctttcagctgttcactatgtacagatctaattaaacattaaaaaa-ggacagaaaatgagatcttaacttttacatgcctaa |
28029974 |
T |
|
| Q |
217 |
cagttagacaacaaatcatggcgacaaactggacaagtagtttttcctccaagtaaccacgagttgagacacgcagtatgaaattcatggccacacactc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28029975 |
tagttagacaacaaatcatggcgacaaactggacaagtagtttttcctccaagtaaccacgagttgagacacgcagtatgaaattcatggccacacactc |
28030074 |
T |
|
| Q |
317 |
caaaagattgaatcatctcgccttttgtgaattcatccatgcaaataggacagtcagtgtttttgtcaccatcaaagcttttaaccggcggcaatgctct |
416 |
Q |
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| T |
28030075 |
caaaagattgaatcatctcgccttttgtgaattcatccacgcaaataggacaatcagtgtttttgtcaccatcaaagcttttaaccggcggcaatgctct |
28030174 |
T |
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| Q |
417 |
tattgcacacctagcaatctctgcaatcgtgccgaaagacatattgatctgctgtaaatcaactatgtaatgtcccctttccctcatagaccatgcatta |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28030175 |
tattgcacacctagcaatctctgcaatcgtgccgaaagacatattgatctgctgtaaatcaactatgtaatgtcccctttccctcatagaccatgcatta |
28030274 |
T |
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| Q |
517 |
tttctattttctctcatagacaatgcaatattattttgtg |
556 |
Q |
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| T |
28030275 |
tttctattttccctcatagacaatgcaatattattttgtg |
28030314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 28029773 - 28029847
Alignment:
| Q |
20 |
atcagaatatgtacaacaataaatcttgaaga------gaaaattctcgacagagggatttcattaatcaaatag |
88 |
Q |
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| T |
28029773 |
atcagaatatgtacaacaataaatcttgaagagaaaatgaaaattctcgacagagggatttcattaatcaaatag |
28029847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 227 - 368
Target Start/End: Original strand, 33142145 - 33142288
Alignment:
| Q |
227 |
acaaatcatggcgacaaactggacaagtagtttttcctccaagtaaccacgagttgagacacgcagtatgaaattcatggcca--cacactccaaaagat |
324 |
Q |
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| T |
33142145 |
acaaatcttgacgacaaattggacaagttgtttttcctccaagtaaccaagaattgaggcatgatgaatgaaattcatgagcacccaaaccccaaaaggt |
33142244 |
T |
|
| Q |
325 |
tgaatcatctcgccttttgtgaattcatccatgcaaataggaca |
368 |
Q |
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| T |
33142245 |
tgaatcaactcccctttagtaaattcttccatgcaaataggaca |
33142288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 437
Target Start/End: Original strand, 33143337 - 33143538
Alignment:
| Q |
227 |
acaaatcatggcgacaaactggacaagtagtttttcctccaagtaaccacgagttgagacacgcagtatgaaattcatggccacacactccaaaagattg |
326 |
Q |
| |
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||||||| || || ||||| || ||||| |||||||| ||||||||||| || ||||| || | | |||||||||||| |||||| |||||| ||| |
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| T |
33143337 |
acaaatcttgacggcaaacggggcaagttgtttttcccccaagtaaccaagaattgaggcaagaggaatgaaattcatgaacacacaaatcaaaaggttg |
33143436 |
T |
|
| Q |
327 |
aatcatctcgccttttgtgaattcatccatgcaaataggacagtcagtgtttttgtcaccatcaaagcttttaaccggcggcaatgctcttattgcacac |
426 |
Q |
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||||| ||| ||||| | |||| ||||||||||||||||| ||| ||| ||| | || |||||||||||||||| |||||||| | ||| |
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| T |
33143437 |
aatcaactcccctttcttaaattgttccatgcaaataggacaatca---------tcaacattagaggttttaaccggcggcaacgctcttatcgtgcac |
33143527 |
T |
|
| Q |
427 |
ctagcaatctc |
437 |
Q |
| |
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||||||||||| |
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| T |
33143528 |
ctagcaatctc |
33143538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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