View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8441_low_7 (Length: 470)
Name: NF8441_low_7
Description: NF8441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8441_low_7 |
 | |
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| [»] scaffold0011 (2 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0011 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 466
Target Start/End: Original strand, 137573 - 138031
Alignment:
| Q |
8 |
catcattagataagtgtcctaaatgcggtgcatcacgatataataagaaagaaacagccccagccaaagtactatggtactttccgataataccaagatt |
107 |
Q |
| |
|
|||||||| ||| |||||||||||| | || ||||||||||| ||||||||||||| ||| ||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
137573 |
catcattaaatatgtgtcctaaatgtagcgcttcacgatataagaagaaagaaacaggtccatccaaagtgctatggtattttccaataataccaagatt |
137672 |
T |
|
| Q |
108 |
taggcgcatgtatcgtaatgcagaagatgcaaagcacttgacatggcatgaatatggaagggttgcagatggaatgcttcgacatcctgcagattctcct |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| |||||||||| | ||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
137673 |
taggcgcatgtatcgtaatgcggaagatgcaaagaacttaacatggcatgcaaatgaaagggttaatgatggaatgcttcgacatcctgcagattctcct |
137772 |
T |
|
| Q |
208 |
caatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcattgtctactgatggaataaaccctcatggtattc |
307 |
Q |
| |
|
||||||| ||||||||| |||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
137773 |
caatgggccaaaattgataatgactactcagattttgggaaagaaacaagaaacctacgtcttgcattgtctactgacggaataaaccctcatggtcttc |
137872 |
T |
|
| Q |
308 |
agagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatggctatatacgaagcgcaagtacatgatgctgacaatgttaat |
407 |
Q |
| |
|
| ||| ||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||| | ||||||||||| ||||||| |||| |||||||| |
|
|
| T |
137873 |
aaagtggtaagcacactacttggccagtgattttgctgatttataacctacctccatggctatgcatgaagcgcaagttcatgatgttgactatgttaat |
137972 |
T |
|
| Q |
408 |
ctctggtccctctgaaccggggaatgatatagacatatacttggctccgttaattgaag |
466 |
Q |
| |
|
||||| ||| | |||| || |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
137973 |
ttctgggcccacacaaccaggaaatgatatagacatatacttggctccattaattgaag |
138031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 8 - 466
Target Start/End: Original strand, 142797 - 143255
Alignment:
| Q |
8 |
catcattagataagtgtcctaaatgcggtgcatcacgatataataagaaagaaacagccccagccaaagtactatggtactttccgataataccaagatt |
107 |
Q |
| |
|
|||||||| ||| |||||||||||| | || ||||||||||| ||||||||||||| ||| | ||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
142797 |
catcattaaatatgtgtcctaaatgtagcgcttcacgatataagaagaaagaaacaggtccatcaaaagtgctatggtattttccaataataccaagatt |
142896 |
T |
|
| Q |
108 |
taggcgcatgtatcgtaatgcagaagatgcaaagcacttgacatggcatgaatatggaagggttgcagatggaatgcttcgacatcctgcagattctcct |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| |||||||||| | ||| ||||||| |||||||| |||||||||||| ||||||||||| |
|
|
| T |
142897 |
taggcgcatgtatcgtaatgcggaagatgcaaagaacttaacatggcatgcaaatgaaagggttaatgatggaatacttcgacatcctacagattctcct |
142996 |
T |
|
| Q |
208 |
caatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcattgtctactgatggaataaaccctcatggtattc |
307 |
Q |
| |
|
||||||| | ||||||| |||| ||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
142997 |
caatgggccataattgataatgactactcggattttgggaaagaaacaagaaacctacgtcttacattgtctactgatggaataaaccctcatggtcttc |
143096 |
T |
|
| Q |
308 |
agagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatggctatatacgaagcgcaagtacatgatgctgacaatgttaat |
407 |
Q |
| |
|
| ||| ||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||| | |||| |||||| ||||||| |||| |||||||| |
|
|
| T |
143097 |
aaagtggtaagcacactacttggccagtgattttgctgatttataacctacctccatggctatgcatgaagtgcaagttcatgatgttgactatgttaat |
143196 |
T |
|
| Q |
408 |
ctctggtccctctgaaccggggaatgatatagacatatacttggctccgttaattgaag |
466 |
Q |
| |
|
||||| ||| | |||| || |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
143197 |
ttctgggcccacacaaccaggaaatgatatagacatatacttggctccattaattgaag |
143255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 16726464 - 16726198
Alignment:
| Q |
8 |
catcattagataagtgtcctaaatgcggtgcatcacgatataataagaaagaaacagccccagccaaagtactatggtactttccgataataccaagatt |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
16726464 |
catcattagataagtgtgctaaatgcggtgcatcacgatataataagaaagaaacagccccagccaaagtgctatggtactttccaatagtaccaagatt |
16726365 |
T |
|
| Q |
108 |
taggcgcatgtatcgtaatgcagaagatgcaaagcacttgacatggcatgaatatggaagggttgcagatggaatgcttcgacatcctgcagattctcct |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16726364 |
taggcgcatgtatcttaatgcagaagatgcaaagcacttgacatggcatgaatatggaagggttgcagatggaatgcttcgacatcctgcagattctcct |
16726265 |
T |
|
| Q |
208 |
caatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16726264 |
caatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcat |
16726198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 80 - 464
Target Start/End: Complemental strand, 14652999 - 14652615
Alignment:
| Q |
80 |
tatggtactttccgataataccaagatttaggcgcatgtatcgtaatgcagaagatgcaaagcacttgacatggcatgaatatggaagggttgcagatgg |
179 |
Q |
| |
|
||||||| |||| |||||||| ||||| |||||||||| | ||| || || |||||||| || ||||||||||| |||||| || || |||||| |
|
|
| T |
14652999 |
tatggtatcttcctataataccgagattcaggcgcatgtttagtagtgaagttgatgcaaaacatttgacatggcacaaatatgatagaattagagatgg |
14652900 |
T |
|
| Q |
180 |
aatgcttcgacatcctgcagattctcctcaatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcattgtct |
279 |
Q |
| |
|
| | |||| || ||||||||||| || || |||| ||||||||||||||||| | |||||||||||||||| |||||||||||| | ||| ||||| |
|
|
| T |
14652899 |
gaagtttcggcaccctgcagattcgccacagtgggctaaaattgatcatgattatcctgattttgggaaagaagcaagaaatctacgcttggcactgtct |
14652800 |
T |
|
| Q |
280 |
actgatggaataaaccctcatggtattcagagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatggctatatacgaagc |
379 |
Q |
| |
|
||||||||||| ||||| |||||| |||| |||| | || ||||| |||||| || ||||||||||| ||||||||||| ||| || ||||| |
|
|
| T |
14652799 |
actgatggaatgaacccacatggttttcaaagtatcccaaataccgtatggcctgtgattttggtgatttataacttgcctccatggttatgtatgaagc |
14652700 |
T |
|
| Q |
380 |
gcaagtacatgatgctgacaatgttaatctctggtccctctgaaccggggaatgatatagacatatacttggctccgttaattga |
464 |
Q |
| |
|
| |||| ||||||| || | |||||||| ||||| | | | |||| ||||||||||| ||| | |||||||| || |||||||| |
|
|
| T |
14652699 |
gtaagttcatgatgttgtcgatgttaatttctgggcgcaatcaaccagggaatgatattgacgtgtacttggcacctttaattga |
14652615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 466
Target Start/End: Original strand, 20748700 - 20749158
Alignment:
| Q |
8 |
catcattagataagtgtcctaaatgcggtgcatcacgatataataagaaagaaacagccccagccaaagtactatggtactttccgataataccaagatt |
107 |
Q |
| |
|
|||||||| ||| |||||||||||| | || ||||||||||| ||||||||||||| ||| ||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
20748700 |
catcattaaatatgtgtcctaaatgtagcgcttcacgatataagaagaaagaaacaggtccatccaaagtgctatggtattttccaataataccaagatt |
20748799 |
T |
|
| Q |
108 |
taggcgcatgtatcgtaatgcagaagatgcaaagcacttgacatggcatgaatatggaagggttgcagatggaatgcttcgacatcctgcagattctcct |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| |||||||||| | ||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20748800 |
taggcgcatgtatcgtaatgcggaagatgcaaagaacttaacatggcatgcaaatgaaagggttaatgatggaatgcttcgacatcctgcagattctcct |
20748899 |
T |
|
| Q |
208 |
caatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcattgtctactgatggaataaaccctcatggtattc |
307 |
Q |
| |
|
||||||| ||||||||| |||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
20748900 |
caatgggccaaaattgataatgactactcagattttgggaaagaaacaagaaacctacgtcttgcattgtctactgacggaataaaccctcatggtcttc |
20748999 |
T |
|
| Q |
308 |
agagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatggctatatacgaagcgcaagtacatgatgctgacaatgttaat |
407 |
Q |
| |
|
| ||| ||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||| | ||||||||||| ||||||| |||| |||||||| |
|
|
| T |
20749000 |
aaagtggtaagcacactacttggccagtgattttgctgatttataacctacctccatggctatgcatgaagcgcaagttcatgatgttgactatgttaat |
20749099 |
T |
|
| Q |
408 |
ctctggtccctctgaaccggggaatgatatagacatatacttggctccgttaattgaag |
466 |
Q |
| |
|
||||| ||| | |||| || |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20749100 |
ttctgggcccacacaaccaggaaatgatatagacatatacttggctccattaattgaag |
20749158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 67 - 464
Target Start/End: Original strand, 6772952 - 6773349
Alignment:
| Q |
67 |
ccagccaaagtactatggtactttccgataataccaagatttaggcgcatgtatcgtaatgcagaagatgcaaagcacttgacatggcatgaatatggaa |
166 |
Q |
| |
|
||||| ||||| ||||||| |||| |||||||| ||||| |||||||||| | ||| || || |||||||| || ||||||||||| |||||| | |
|
|
| T |
6772952 |
ccagctaaagtcgtatggtatcttcctataataccgagattcaggcgcatgtttagtagtgaagttgatgcaaaacatttgacatggcacaaatatgata |
6773051 |
T |
|
| Q |
167 |
gggttgcagatggaatgcttcgacatcctgcagattctcctcaatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacg |
266 |
Q |
| |
|
| || |||||| | | ||||||| ||||||||||| || || |||| ||||||||||||||||| | |||||||| ||||||| |||||||||||| |
|
|
| T |
6773052 |
gaattagagatgggaagtttcgacaccctgcagattcgccacagtgggctaaaattgatcatgattatcctgattttggaaaagaagcaagaaatctacg |
6773151 |
T |
|
| Q |
267 |
tcttgcattgtctactgatggaataaaccctcatggtattcagagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatgg |
366 |
Q |
| |
|
| | ||| |||||||||||||||| ||||| |||||| |||| |||| | || ||||| |||||| || ||||||||||| ||||||||||| |
|
|
| T |
6773152 |
tttggcactgtctactgatggaatgaacccacatggttttcaaagtatcccaaataccgtatggcctgtgattttggtgatttataacttgcctccatgg |
6773251 |
T |
|
| Q |
367 |
ctatatacgaagcgcaagtacatgatgctgacaatgttaatctctggtccctctgaaccggggaatgatatagacatatacttggctccgttaattga |
464 |
Q |
| |
|
|||| || |||||| |||| ||||||| || | |||||||| ||||| || | |||| ||||||||||||||| | |||||||| || |||||||| |
|
|
| T |
6773252 |
ctatgtatgaagcgtaagttcatgatgttgtctatgttaatttctgggcctaatcaaccagggaatgatatagacgtgtacttggcacctttaattga |
6773349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 80 - 464
Target Start/End: Complemental strand, 34211415 - 34211031
Alignment:
| Q |
80 |
tatggtactttccgataataccaagatttaggcgcatgtatcgtaatgcagaagatgcaaagcacttgacatggcatgaatatggaagggttgcagatgg |
179 |
Q |
| |
|
||||||| |||| |||||||| ||||| ||||||||| | ||| || || |||||||| || ||||||||||| |||||| || || |||||| |
|
|
| T |
34211415 |
tatggtatcttcctataataccgagattcgggcgcatgtttagtagtgaagttgatgcaaaacatttgacatggcacaaatatgatagaattagagatgg |
34211316 |
T |
|
| Q |
180 |
aatgcttcgacatcctgcagattctcctcaatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcattgtct |
279 |
Q |
| |
|
| | |||| || ||||||||||| || || |||| ||||||||||||||||| | |||||||||||||||| |||||||||||| | ||| ||||| |
|
|
| T |
34211315 |
gaagtttcggcaccctgcagattcgccacagtgggctaaaattgatcatgattatcctgattttgggaaagaagcaagaaatctacgcttggcactgtct |
34211216 |
T |
|
| Q |
280 |
actgatggaataaaccctcatggtattcagagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatggctatatacgaagc |
379 |
Q |
| |
|
||||||||||| ||| | |||||| |||| |||| | || ||||| |||||| || ||||||||||| ||||||||||| ||| || ||||| |
|
|
| T |
34211215 |
actgatggaatgaacgcacatggttttcaaagtatcccaaataccgtatggcctgtgattttggtgatttataacttgcctccatggttatgtatgaagc |
34211116 |
T |
|
| Q |
380 |
gcaagtacatgatgctgacaatgttaatctctggtccctctgaaccggggaatgatatagacatatacttggctccgttaattga |
464 |
Q |
| |
|
| |||| ||||||| || | |||||||| | ||| | | | |||| ||||||||||| ||| | |||||||| || |||||||| |
|
|
| T |
34211115 |
gtaagttcatgatgttgtcgatgttaatttatgggcgcaatcaaccagggaatgatattgacgtgtacttggcacctttaattga |
34211031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 80 - 464
Target Start/End: Complemental strand, 130074 - 129690
Alignment:
| Q |
80 |
tatggtactttccgataataccaagatttaggcgcatgtatcgtaatgcagaagatgcaaagcacttgacatggcatgaatatggaagggttgcagatgg |
179 |
Q |
| |
|
||||||| |||| |||||||| ||||| |||||||||| | ||| || || |||||||| || ||||||||||| |||||| || || ||||| |
|
|
| T |
130074 |
tatggtatcttcctataataccgagattcaggcgcatgtttagtagtgaagttgatgcaaaacatttgacatggcacaaatatgatagaattagagatga |
129975 |
T |
|
| Q |
180 |
aatgcttcgacatcctgcagattctcctcaatgggaaaaaattgatcatgattaccaagattttgggaaagaagaaagaaatctacgtcttgcattgtct |
279 |
Q |
| |
|
| | ||||||| ||||||||||| || || |||| ||||||||||||||||| | ||||||||||||||| |||||||||||| | ||| ||||| |
|
|
| T |
129974 |
gaagtttcgacaccctgcagattcgccacagtgggctaaaattgatcatgattatcctaattttgggaaagaagcaagaaatctacgcttggcactgtct |
129875 |
T |
|
| Q |
280 |
actgatggaataaaccctcatggtattcagagtagtaagcacactacttggccggtgattatgatgatttataacctgcctccatggctatatacgaagc |
379 |
Q |
| |
|
||||||||||| ||||| |||||| |||| |||| |||| ||||| |||||| || ||||||||||| ||||||||||| ||| || ||||| |
|
|
| T |
129874 |
actgatggaatgaacccacatggttttcaaagtatcccaaacaccgtatggcctgtgattttggtgatttataacttgcctccatggttatgtatgaagc |
129775 |
T |
|
| Q |
380 |
gcaagtacatgatgctgacaatgttaatctctggtccctctgaaccggggaatgatatagacatatacttggctccgttaattga |
464 |
Q |
| |
|
| |||| ||||||| || | |||||||| ||||| | | | |||| ||||||||||| || | |||||||| || |||||||| |
|
|
| T |
129774 |
gtaagttcatgatgttgtcgatgttaatttctgggcgcaatcaaccagggaatgatattgatgtgtacttggcacctttaattga |
129690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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