View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8441_low_9 (Length: 417)
Name: NF8441_low_9
Description: NF8441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8441_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 280 - 401
Target Start/End: Complemental strand, 52548216 - 52548095
Alignment:
| Q |
280 |
cagcttggtactcaaagttccctaatgaggatgagtgctgcaagcagtgcatttaattggaagtcatataatgaagaaccagcttcatccggtgaacatg |
379 |
Q |
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| T |
52548216 |
cagcttggtactcaaagttccctaatgaggatgagtgctgcaaacagtgcatttaattggaagtcaaataatgaagaaccagcttcatccggtgaacatg |
52548117 |
T |
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| Q |
380 |
attccatcacagcatatgcatt |
401 |
Q |
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| T |
52548116 |
attccatcacagcatatgcatt |
52548095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 52548392 - 52548299
Alignment:
| Q |
1 |
gcggcaacggttaaatatggagatgcacaacatgaactacctccttggtctattagcattcttcctaactgcaaaactgcaattttcaacactg |
94 |
Q |
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| T |
52548392 |
gcggcaacggttaaatatggagatgcacaacatgaactacctccttggtctattagcattcttcctaactgcaaaactgcaattttcaacactg |
52548299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 5231521 - 5231623
Alignment:
| Q |
1 |
gcggcaacggttaaatatggagatgcacaacatgaactacctccttggtctattagcattcttcctaactgcaaaactgcaattttcaacactgcaaggg |
100 |
Q |
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| T |
5231521 |
gcggcaacggttacatttggaaatggccaatatgatctaccaccttggtctgtcagcattcttcctgattgcaaaactgtagttttcaacacggcaacgg |
5231620 |
T |
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| Q |
101 |
taa |
103 |
Q |
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| T |
5231621 |
taa |
5231623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 17127110 - 17127176
Alignment:
| Q |
37 |
ctacctccttggtctattagcattcttcctaactgcaaaactgcaattttcaacactgcaagggtaa |
103 |
Q |
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| T |
17127110 |
ctacccccttggtctatcagtattcttcctgactgcaaaactgaggttttcaacactgcaaaggtaa |
17127176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 5453393 - 5453429
Alignment:
| Q |
38 |
tacctccttggtctattagcattcttcctaactgcaa |
74 |
Q |
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| T |
5453393 |
tacctccttggtctataagcattcttcctaactgcaa |
5453429 |
T |
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