View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8442_high_1 (Length: 398)
Name: NF8442_high_1
Description: NF8442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8442_high_1 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 110672 - 111055
Alignment:
| Q |
1 |
gtaagttttgaattattctccctttcaagtcatcgacttagaggtcagttacatgctatactgcttttgtgttgagaaactataagtgtatgctgaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110672 |
gtaagttttgaattattctccctttcaagtcatcgacttagaggtcagttacatgctatactgcttttgtgttgagaaactataagtgtatgctgaaatc |
110771 |
T |
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| Q |
101 |
ggtttgtgtgattctatgatttctttattttgataatgacttaaccgagtgaggctttggatgtctttcaggcttcagcttacaggctaattttgaatgg |
200 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110772 |
ggttggtgtgattctatgattt--ttattttgataatgacttaaccgagtgaggctttggatgtctttcaggcttcagcttacaggctaattttgaatgg |
110869 |
T |
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| Q |
201 |
gtcaaaatgaatcataatttttcgttctttttaagtgaatgttttgtttaaaccaatgtcatcctggacttgaataattttgaagtacattatattaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110870 |
gtcaaaatgaatcataatttttcgttctttttaagtgaatgttttgtttaaaccaatgtcatcctggacttgaataattttgaagtacattatattaaat |
110969 |
T |
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| Q |
301 |
ttaagaagccatgggatgaactgtttagagtattagaaattgaactatatgtttagtactctttttattattaagaacgtgatgtc |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
110970 |
ttaagaagccatgggatgaactgtttagagtattagaaattgaactatatgcttagtactctttttattattaagaacgtgatgtc |
111055 |
T |
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