View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8442_low_2 (Length: 337)
Name: NF8442_low_2
Description: NF8442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8442_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 38724110 - 38724419
Alignment:
| Q |
13 |
atggacatcaacattaattttgaggtactcaaattataaattattttctttatttaattgggctagaattttgttgagataaatattggagggaaagtat |
112 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38724110 |
atggccatcaacattaattttgaggtactcaaaatataaattattttctttatttaattgggctagaattttgttgagataaatattggagggaaagtat |
38724209 |
T |
|
| Q |
113 |
agaatagaataagataaaattgatactgttgaattttatctcattccattatttcttttataatataacagaacactgcttcatttcctattgggtcgaa |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38724210 |
agaatagaataagataaaattgatcctgttgaattttatctcattccattatttcttttataatataacagaacactgcttcatttcctattgggtcgaa |
38724309 |
T |
|
| Q |
213 |
agtagaacaagctgttgcggttcgcatcactgggaataaaactgccttttacaattgcacattctctggtgttcaagacaccctatacgatcacaaaggc |
312 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38724310 |
agtagaacaagctgttgcggttcgcatcaccgggaataaaactgccttttacaattgcacattctctggtgttcaagacaccctatacgatcacaaaggc |
38724409 |
T |
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| Q |
313 |
cttcattact |
322 |
Q |
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|||||||||| |
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| T |
38724410 |
cttcattact |
38724419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 317
Target Start/End: Complemental strand, 8815592 - 8815492
Alignment:
| Q |
217 |
gaacaagctgttgcggttcgcatcactgggaataaaactgccttttacaattgcacattctctggtgttcaagacaccctatacgatcacaaaggccttc |
316 |
Q |
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|||||||| ||||| |||| ||||||| || ||| ||||||||||||||||| |||| ||| || |||||||| ||||| || |||||||| |||| |
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| T |
8815592 |
gaacaagcagttgcaattcgagtcactggaaacaaagctgccttttacaattgcttgttctatggggtccaagacactctatatgaccacaaaggacttc |
8815493 |
T |
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| Q |
317 |
a |
317 |
Q |
| |
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| T |
8815492 |
a |
8815492 |
T |
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