View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8442_low_3 (Length: 331)
Name: NF8442_low_3
Description: NF8442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8442_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 5462038 - 5462330
Alignment:
| Q |
18 |
gtaccgtaccagttcaatgcatcaaatccaatcttatgccacttaccataactaaatcacattacaaccaaacagttaatggaaagtttcccagttcctg |
117 |
Q |
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| T |
5462038 |
gtaccgtaccagttcaatgcatcaaatccaatcttatgccacttaccataactaaatcacattacaaccaaacagttaatggaaagtttcccagttcctg |
5462137 |
T |
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| Q |
118 |
aaaagtaaagtaaccgccctcgtcctaacccatcaattaaatcacttacaacttttacatgctttatcaaatcatcccaacccaattgttacttacacat |
217 |
Q |
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| T |
5462138 |
aaaagtaaagtaacctccctcgtcctaacccatcaattaaatcacttacaacttttacatgctttatcaaatcatcccaacccaattgttacttacacat |
5462237 |
T |
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| Q |
218 |
acccatcaaatcacacaaaaccattttcccattctcaatgcaatgcaaccctgtctcaattcatagaaagcaaggtatcccaagtgcaagtag |
310 |
Q |
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| T |
5462238 |
acccatcaaatcacacaaaaccattttcccattctcaatgcaatgcaaccctgtctcaattcatagaaagcaaggtatcccaagtgcaagtag |
5462330 |
T |
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