View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8443_high_1 (Length: 553)
Name: NF8443_high_1
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8443_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 36 - 353
Target Start/End: Original strand, 36468362 - 36468679
Alignment:
| Q |
36 |
ctccacctggcctccagtaacacaccaccgctatcatcacgctcctcttcttctcctcttagaattccacccctccatttccaagttctaacattctaac |
135 |
Q |
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| T |
36468362 |
ctccacctggcctccagtaacacaccaccgctatcattacgctcctcttcttctcctcttagaattccacccctccatttccatgttctaacattctaac |
36468461 |
T |
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| Q |
136 |
tcccctaatatacacacgaaaaaccaaaaacccttatttatcttcaatggttttaatataaacaacttgtgcaactctttcacgatataaatgaattaga |
235 |
Q |
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| T |
36468462 |
tcccctaatatacacacgaaaaaccaaaaacccttatttatcttcaatggtattaatataaacaacttctgcaactctttcacgatataaatgaattaga |
36468561 |
T |
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| Q |
236 |
aatattttgtttgtaacctgatttgaactctaactcatttaacttattttcataaacttgttttgctttcgttcaatcttcaattgttaaaaacaacttg |
335 |
Q |
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| T |
36468562 |
aatattttgtttgtaacctgattttaactctaactcatttaacttattttcataaacttgttttgctttcgttcaatcttcaattgttaaaaacaacttg |
36468661 |
T |
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| Q |
336 |
tgcacaaattaaattctt |
353 |
Q |
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| T |
36468662 |
tgcacaaattaaattctt |
36468679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 436 - 530
Target Start/End: Original strand, 36470228 - 36470322
Alignment:
| Q |
436 |
tcttaatcttttcttctctatcctcaatcctgtccactattacactccacccttgcattttccctccccttatctgatttctaataacaaatagt |
530 |
Q |
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| T |
36470228 |
tcttaatcttttattctcaatcctcaatcctgtccactattacactccacccttgcattttccctccccttatctgatttctaataataaatagt |
36470322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 370 - 440
Target Start/End: Original strand, 36469936 - 36470006
Alignment:
| Q |
370 |
aaaggaaatatacctttctcgctcatccaactttttaaataagagcgtcatttacacattttagcatctta |
440 |
Q |
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| T |
36469936 |
aaaggaaatatatctttctcgctcagccaactttttaaataagagcgtcatttacacattttagcatctta |
36470006 |
T |
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